Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1539 ATGCAACGAGTGGGCAGAAACATGCAGAGGAAGGAGGAGGGTGCACAAACGACGTCGTTTCAAGATCTTAAAACGACGCCGTTGCGAAATCTTCCTCCTGGAACTGAAAACAGCCGGATGGAATTGGTAGGAGAATCAGAAGAATCAGGCGGCGGCAGCGGCGGTGATGGCCGGTCTGTGGTGGTCGTGGGAGTGAAGCTGGATCAGCGGAGTAAAGAGTTGCTGACGTGGGCTCTGGTCAAGGTGGCGCAGTCCGGCGATCGAGTCGTCGCCGTTCATGTGCTCACCGACGCAGCTGCTGTCACTATGACTGGGGGAAAATCGTCCCTTCTCTCTCTTTTCGATACATTTAAAACCCTTCTCGCTGCATACGAAGGTTTCTGCAACTTGAAACAGGTTGAACTTAAGCTTAAGGTGTGTAGAGGGTCATCAGTTCCAAAAATTCTAGTCCGGGAAGCAAAATCGCATGCCAATGTGAAGGTTATCGTGGGAATTTCTAGGACTAACCACACAATCTGGCGGTCCCCAGCATGGGTTGCTAAGTATTGTGCGAGAAAACTATCTAGTAATTTCTCGGTTTTTGCTGTTGACAACGGGAAAATTGTTTTCCAGAGAAGAGCAACTGCCAAGACTACCGATTATTCTCGAGTGGTAGCGTTGAATCAAGATAGTGGGTCTTACTTACAGAAGGCCCGCTCGCTTTGTGGGAGGAATACCCTCATAAGGAGTTTCTTGAGTTGTTCGCCCTACTCAGTGTTGCCAGAAAAGGATTGTAGCCAAGTAATGGAAGAGTTGTCTGATGAGGATGAGAGCATTGAAGACAATTCATTTGCTTTGGTTCCAATCGAACCAATGGAGTCTGTTTCATGTTCAAATTCTGTTGTGGTGGATGACTTTCCTGAGTTAAAACCTGTGAGGCTGAGCCTTCGCCGGATATTTTTACGAAACCGGCAATCCTCAGAGAAATCTTCTTTAAGAAAGATGCCTTTATCTCAATGGGTACTGAGACTACCTAGCTGCCATAATTCGGCAGTGGTCTATCCTGATAAAAAGCATAGCAGCTCCGATTCTGATCAGGATGAAGATCATAGTGCCAACTTGGATGGGGAGAAAGGTGCAATTTTGCTGCTTGGGTCTGATGCGGGCTTTACTCCGGAGTCGCCTAACGGATCCGCAAAGAGCCTTCCTAAAGAGTTGGAGGGTCTTCATGAAAAGTATTCATCCACCTGTAGATTATTTACCTACCAGGAACTTTTGTTGGCAACGTCTAACTTCAGGCCAGAAAACATGGTTGGAAAAGGTGGCAATAGTCAGGTGTATAAAGGTTGTCTTCCAGATGACCGGGAACTGGCAGTAAAAATTTTGAAGCAATCTGGGGATGTGTTGAAGGAGTTTGTGCTGGAAATTGAAATCATTACTACTTTACATCACAAGAACATAATCTCTCTGTTTGGGTTTTGCTTTGAGGACAACAATCTACTCTTGGTTTATGACTTTCTATCAAGAGGAAGCCTAGAAGAGAACCTTCATGGAAAGAAGAAGGATCCAATGACATTTGGTTGGGGAGAGAGATATAGGGTGGCTCTAGGTGTAGCTGAGGCACTGGACTATCTACACAATGGCTGTGGTCAACCTGTGATCCACAGGGATGTCAAATCTTCAAATATCCTTCTCTCAGATGATTTTGAGCCGCAGCTGTCAGATTTTGGACTTGCGGCATGGGCTAATACTGCTTCCCATAAAAATTGCCCTGATGTTGCGGGAACTTTTGGATACTTGGCTCCAGAATACTTCATGTATGGGAAGGTGAATGACAAAATTGATGTCTATGCGTTTGGTGTTGTACTCCTTGAGCTTCTTTCAGGTAGAAAGCCAATTAGCTCAGAATATCCAAAGGGCCAGGAGAGCCTAGTTATGTGGGCAAAGCCAATTTTAAGAAGTGGGAAGATTTCCAAGTTGTTAGATCCAGATTTGGACAGTAACTATGATGATCCGCAGATTGAGAGAATGGTTTTGGCTGCTACACTTTGCCTCCGACGTGCACCTAGATTTCGGCCTCAAATTGGTCTCGTTTTGAAGCTCCTCCTAGGTGACATGGAAATTATCCAGTGGGCAAAGCAACAAGTTAGTGCAATGGAAGGACAAGAAGTGGAAGGGGAATCTTTTCCTTCTAATATTCAATCCCATCTTAACCTTGCTTTGCTAGATTTGGAGGATGATTCACTTTCTATTAGCAGCACTGAGCAAAGCATCTCATTAGAGGATTATTTGCAAGGGAGATGGAGCCGCTCATCAAGCTTTGCCTAA 2307 0.4534 MQRVGRNMQRKEEGAQTTSFQDLKTTPLRNLPPGTENSRMELVGESEESGGGSGGDGRSVVVVGVKLDQRSKELLTWALVKVAQSGDRVVAVHVLTDAAAVTMTGGKSSLLSLFDTFKTLLAAYEGFCNLKQVELKLKVCRGSSVPKILVREAKSHANVKVIVGISRTNHTIWRSPAWVAKYCARKLSSNFSVFAVDNGKIVFQRRATAKTTDYSRVVALNQDSGSYLQKARSLCGRNTLIRSFLSCSPYSVLPEKDCSQVMEELSDEDESIEDNSFALVPIEPMESVSCSNSVVVDDFPELKPVRLSLRRIFLRNRQSSEKSSLRKMPLSQWVLRLPSCHNSAVVYPDKKHSSSDSDQDEDHSANLDGEKGAILLLGSDAGFTPESPNGSAKSLPKELEGLHEKYSSTCRLFTYQELLLATSNFRPENMVGKGGNSQVYKGCLPDDRELAVKILKQSGDVLKEFVLEIEIITTLHHKNIISLFGFCFEDNNLLLVYDFLSRGSLEENLHGKKKDPMTFGWGERYRVALGVAEALDYLHNGCGQPVIHRDVKSSNILLSDDFEPQLSDFGLAAWANTASHKNCPDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSEYPKGQESLVMWAKPILRSGKISKLLDPDLDSNYDDPQIERMVLAATLCLRRAPRFRPQIGLVLKLLLGDMEIIQWAKQQVSAMEGQEVEGESFPSNIQSHLNLALLDLEDDSLSISSTEQSISLEDYLQGRWSRSSSFA* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1539 768 PANTHER OS08G0249100 PROTEIN 123 721 IPR046958 -
Vvi4g1539 768 SMART serkin_6 425 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1539 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Vvi4g1539 768 Pfam Protein kinase domain 428 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1539 768 MobiDBLite consensus disorder prediction 351 365 - -
Vvi4g1539 768 Gene3D Phosphorylase Kinase; domain 1 391 499 - -
Vvi4g1539 768 MobiDBLite consensus disorder prediction 11 33 - -
Vvi4g1539 768 Gene3D Transferase(Phosphotransferase) domain 1 500 713 - -
Vvi4g1539 768 Gene3D HUPs 59 196 IPR014729 -
Vvi4g1539 768 FunFam Putative receptor-like serine/threonine-protein kinase 500 711 - -
Vvi4g1539 768 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 57 197 - -
Vvi4g1539 768 SUPERFAMILY Protein kinase-like (PK-like) 406 695 IPR011009 -
Vvi4g1539 768 MobiDBLite consensus disorder prediction 1 57 - -
Vvi4g1539 768 ProSitePatterns Protein kinases ATP-binding region signature. 431 453 IPR017441 GO:0005524
Vvi4g1539 768 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 394 499 - -
Vvi4g1539 768 ProSiteProfiles Protein kinase domain profile. 425 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1539 768 MobiDBLite consensus disorder prediction 346 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1539 Vvi-Chr4 23153418 23156996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1539 413 702 Trihelix Transcription Factor Family AT1G70460 44.781 6.23e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi4g1539 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1539 - - vvi:100243137 1427.92