Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1533 ATGAAGATGGAAGAAGGAAGTATCAACCTTCCTCCTGGATTCCAATTCTACCCAACTGATGAAGAACTAGTCCTTGACTTTCTATACCGCAAGGCATCACTCTTGCCGTGCTACCCCAACATCATTCCAGATCTTGATTCTTATGTTCATGATCCATGGGAGCTCAGTGGTAAGGCATTATCGAGTGGAAACCAGTGGTATTTCTTTAGCCAAAAGACACAAGACCGGGCCACAAAAAATGGATATTGGAAGCAATTAGATATTGATGAAGCCATATACACAAGTGCTGGTAAGAAAGTGGGAATCAAGAAGTATCTTTTATTCTACATGGGTGAAGCTCCAGAAGGCATCGAAACCAATTGGATAATGCAGGAATATTCTCTTTCCAACAGTGGATTGGGCTGTACATCCTACAAAAGAATAGCAGGGAAAAAAATTTTGGATGGTGTTGAATGGGTTCTTTGTCGAGTTTATGAAAGAAAGAGTTCTCAACATGGTTTTTGGTGCGATGAGGACGATGATGATGGAACCGAGCTTTCATGTTTAGACGAAATTTTCTTGTCATTAGATGATGATCTCGATGAAATAAGTTTGCCAAATTAG 603 0.4013 MKMEEGSINLPPGFQFYPTDEELVLDFLYRKASLLPCYPNIIPDLDSYVHDPWELSGKALSSGNQWYFFSQKTQDRATKNGYWKQLDIDEAIYTSAGKKVGIKKYLLFYMGEAPEGIETNWIMQEYSLSNSGLGCTSYKRIAGKKILDGVEWVLCRVYERKSSQHGFWCDEDDDDGTELSCLDEIFLSLDDDLDEISLPN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1533 200 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Vvi4g1533 200 Pfam No apical meristem (NAM) protein 11 128 IPR003441 GO:0003677|GO:0006355
Vvi4g1533 200 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Vvi4g1533 200 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Vvi4g1533 200 PANTHER NAC TRANSCRIPTION FACTOR 56 10 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1533 Vvi-Chr4 23068735 23069576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1533 6 164 NAC Transcription Factor Family AT1G61110 43.529 8.27e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi4g1533 NAM 9.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1533 - - vvi:100267164 410.609