Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1529 ATGAACGAGGCTGAAATGGTGATACCCCACTTGTTCAGATGCCCGATTAGTCTAGACTTGTTTACAGATCCAGTCACTCTATCCACAGGCCAAACGTACGATCGGTCCAGCATAGAACAATGGCTGGCTGCAGGCAACCTCACATGCCCTGTCACAATGCAGAAGCTCCATGATCCATCTATGGTTCCAAACCATACTCTTCGCCATTTGATAGATCAGTGGCTTCAAACAGGTCAACAAGTGGATCCTGAGAGCTTGACGGTAATGGGTCCTGGCCCCTCATTGGCTGCAATGAAGTGCAGCCTTCAATCTCAGGAATCCTCATTGGAGAACAAGCTTGAGACGCTCAAAGCAATTCGAGTTTCGAGTGATGAATTGTCATCTAGGAATTCTTATATGATCCAATTGGGCTTCTTGCCATTGCTATTGGAACTTGTATTTGGACAGGTCGAAGCCGAGCAATATAGGGACAGTTTGAAGCTTGTGGAGGAAGCACTTTCTTGTGCCTTGAAATTGCTGGCTTTCAGTGAATTGGGGTGCCTAAACATGCTGAAAGAGGAGTCAAAATTAGAATCTTTGGTTGTTTTGTTCAAACACGGGACTCCCATGATAAAGACAAGTGTATGTAATCTTCTGGAGGCAATTTCATCTTCCTCAGAAACTAAAGAGCTCTGTGCTACGCTTGGAACGACCCACCAACTCTTACAGGGGATAGTCCTCCTTGTTCACCATGACTGCGAGGCTTCTGAAGCCGGAATCAAAGCCATGTTGGCATTGTGCTCCGTAGAATCAAATAAAGAAAATTTGATAAGGGAAGGGGCAGTAGATGGACTCATAAGCTACATTTCCAATGCCCAAGTGAAAGAAAAAAGCGCAGCGCCATTGGCAATAGCAGTACTAGAAGTGCTTTTAGGAGTAGAGAGTGGAAGAGAGGCGGTCCTTAACAATCCCAATGGTGTTAAGGCCCTGGTTAAGATGACTTTCAAAGTATCAGATCACCAAGGCAGTGAGAACGCTGTTAGCTCTCTTATGGTGCTATGCACTGATTCATTACGGGCAAGGGAAGAAGCCATTTCTGCAGGAGTTTTGTCACAGTTGTTGTTTTTGCTTCAGAGCCAGTGCAGTGGGACGATCAAGACAAAGGCAAGAATGCTGCTTAAGCTTCTTAGATCAAAGAGAATTATGGACCAAAACCATTGA 1200 0.4517 MNEAEMVIPHLFRCPISLDLFTDPVTLSTGQTYDRSSIEQWLAAGNLTCPVTMQKLHDPSMVPNHTLRHLIDQWLQTGQQVDPESLTVMGPGPSLAAMKCSLQSQESSLENKLETLKAIRVSSDELSSRNSYMIQLGFLPLLLELVFGQVEAEQYRDSLKLVEEALSCALKLLAFSELGCLNMLKEESKLESLVVLFKHGTPMIKTSVCNLLEAISSSSETKELCATLGTTHQLLQGIVLLVHHDCEASEAGIKAMLALCSVESNKENLIREGAVDGLISYISNAQVKEKSAAPLAIAVLEVLLGVESGREAVLNNPNGVKALVKMTFKVSDHQGSENAVSSLMVLCTDSLRAREEAISAGVLSQLLFLLQSQCSGTIKTKARMLLKLLRSKRIMDQNH* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1529 399 Gene3D - 77 397 IPR011989 -
Vvi4g1529 399 FunFam RING-type E3 ubiquitin transferase 8 80 - -
Vvi4g1529 399 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Vvi4g1529 399 CDD RING-Ubox_PUB 9 56 IPR045210 -
Vvi4g1529 399 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Vvi4g1529 399 PANTHER WDSAM1 PROTEIN 5 391 IPR045185 GO:0061630
Vvi4g1529 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 76 IPR013083 -
Vvi4g1529 399 SUPERFAMILY RING/U-box 5 77 - -
Vvi4g1529 399 Pfam U-box domain 8 77 IPR003613 GO:0004842|GO:0016567
Vvi4g1529 399 SUPERFAMILY ARM repeat 108 386 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1529 Vvi-Chr4 22980143 22981342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1529 8 390 U-box Gene Family AT1G49780 32.581 2.32e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1529 - - vvi:100267170 750.355