Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1523 ATGCCACAAGCTATGCAGTTCGGTGCCTGGAGTCTCTCTCCGATGGAGGATTCTGCCGGCGGTAGCAGCGATGATGGGAGGAATTGCCAAAGAGGACACTGGAGGCCTGCTGAAGATGAGAAACTCCGGCAACTCGTCGACCAGTATGGGCCCCATAATTGGAATTCCATTGCAGATAAGCTTGAGGGAAGATCAGGGAAAAGTTGCAGACTAAGATGGTTTAACCAACTTGATCCCAGAATTAATCGAAAACCATTTACGGAAGAAGAGGAAGAGAGGCTCCTTGCAGCTCATCGGATTCATGGAAACAAGTGGTCTCTGATAGCTCGCCTATTTCCCGGTAGAACCGACAACGCTGTGAAGAATCACTACCATGTTATCATGGCAAGAAGACATAGAGAAAGGTTGAGGCAGTGCAGTAAGAGAAGTTGCCAAGATCATCCTAATGACTCCAACACAAACCCTAGTAGCTTTTTCTTGAAGTTCTCCAGGCCCCAGCTAGAGTATAACACTAAATTAGGGTTTCCGGATTTCCAAAACCATGAAAGAAACGGAATCTTCCCAGTTTCATTCTCGAAGTCATTGCCTTCATGGACACACAGTGGATCAACGAATAATCCAAATTCACTGAGGCTTGATAAGATTTTTGGTGCAAGTTCTTCTTCCTGTTCGAAAGAGCCATCACACAACGGTTTAGATCAATCTCTTAGCTCTTACTATTCTAACTCTTCCAGCTATGGCAGTTACAGGAATTTAAGTTCACTAGGGATGCCTTACCTTGGCGATGATCGGGGAATCCATGGAGCGATGAAGAACAAGTTAGTGAAACTCAGTGATAATTCAACAACATTTCCCAAGTTGCGAATAATTACTGAGCAAAAGCAAGAAGAATCAATCAAGAGCACGGATGTTCCCTTCATCGATTTTCTTGGTGTTGGAAGCTCTTCTTAG 951 0.4448 MPQAMQFGAWSLSPMEDSAGGSSDDGRNCQRGHWRPAEDEKLRQLVDQYGPHNWNSIADKLEGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWSLIARLFPGRTDNAVKNHYHVIMARRHRERLRQCSKRSCQDHPNDSNTNPSSFFLKFSRPQLEYNTKLGFPDFQNHERNGIFPVSFSKSLPSWTHSGSTNNPNSLRLDKIFGASSSSCSKEPSHNGLDQSLSSYYSNSSSYGSYRNLSSLGMPYLGDDRGIHGAMKNKLVKLSDNSTTFPKLRIITEQKQEESIKSTDVPFIDFLGVGSSS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1523 316 MobiDBLite consensus disorder prediction 1 37 - -
Vvi4g1523 316 CDD SANT 94 125 IPR001005 -
Vvi4g1523 316 CDD SANT 34 75 IPR001005 -
Vvi4g1523 316 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Vvi4g1523 316 PANTHER MYB PROTEIN-RELATED 31 182 - -
Vvi4g1523 316 Pfam Myb-like DNA-binding domain 34 94 - -
Vvi4g1523 316 Gene3D - 84 154 - -
Vvi4g1523 316 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Vvi4g1523 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Vvi4g1523 316 Gene3D - 31 82 - -
Vvi4g1523 316 SUPERFAMILY Homeodomain-like 30 124 IPR009057 -
Vvi4g1523 316 SMART sant 82 130 IPR001005 -
Vvi4g1523 316 SMART sant 30 79 IPR001005 -
Vvi4g1523 316 FunFam MYB transcription factor 31 82 - -
Vvi4g1523 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 77 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1523 Vvi-Chr4 22916055 22917305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1523 29 135 MYB Transcription Factor Family AT1G17950 86.916 3.08e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g1523 Myb_DNA-bind_6 9.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1523 K09422 - vvi:100242035 632.869