Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1522 ATGTCTTTAATCAGACCTGCAGATTCATCTGCTCCTTCATATGGGGAGTCAAGAATTTACCAGGCCAAAGGAAGCAGCAACCCTTCTGGTTTATCCACTCAGATGTACAGTTCAAATAAACAGAAGTTTAAGCATGTTACAGAATCTAACCACTTGGACAGTTACAACCAGCAGAGCTTCCCCGAGTCCTCCACTGCAGAGTTGCATGCGTTGCAAGCCAACGTCTATCACCCATCTAACTCTGGTGTTCCTGGGGGGGCGTTCTGCCCCCAAGTTTCCTGTTCTTCTGCTACCGCACACAACTCATATTTGGAGAAAATCTTGGATCCAATAGACTCTGGTGAAGATAATATTAGGTTAAAGCTTAGAGAACTGGAGAGTGCACTGTTGAATGATAATGATGAGGATGATTATTATTATAATGGTGGAATTAGCGGTCCAGAACATAACATGAATATTGATAGTGAATGGGCTGACTCGATCAAGGATATATTATTGCTGCCAAATTCACCAAAGGACTCTTCATCTGACTCCAACCTCAGTTACATATGCAGCAACAAAGAAACATCAGCGTGCACATCTAGGCCCACAACCCCAAAGCAGATGCTTTTCAATTGTGCTGCTGCCCTTTCAGAAGGCAATATGGAACAAGCGTCCACCATCATTGCCACTCTCCGGAGGATGGTCTCTATCCAAGGAGATCCTCCCCAAAGAATTGCGGCTTACATGGTTGAAGGACTTGCAGCTCGCATGGCTGCATCAGGCCAAGGACTATACAGAGCTCTGAAATGCAAAGAGCCACCCACTTCCGACCGGCTCTCTGCCATGCAAATCCTCTTTGAGGTGTGCCCTTGTTTCAAGTTTGGTTTCATGGCAGCAAATGGTGCAATCACAGAAGCCTTCAAAGGTGAAAAAGGAGTTCATATAATAGATTTTGACATAAATCAAGGGAGCCAATACATAACCCTGATACAGGCACTTGCTGCTCAACCTGCTAAGCCTTGCGTGAGGATTACTGGGGTGGATGATCCTGAATCGGTTCAACGAAAAGTTGGTGGTCTGAAGATCATCGGCCAGAGACTGGAGCAGCTAGCAGAGGCATGTGGTGTGCCATTTGAGTTCCGAGCAATAGCTGCCAAAACTGCAGATATAACCCCATCAATGCTCAACTGCCTGCCAGGTGAGGCTCTTCTTGTGAACTGTGCCTTCCAACTTCACCACATGCCAGATGAGAGTGTTTCAACTGTAAATCAACGGGACCAACTCCTTCGAATGATAAAGAGCTTGACTCCTAAACTGGTGACTGTTGTAGAGCAGGATGTGAACACAAACACTGCCCCATTTTTCCCCAGGTTTATTGAAGCTTATAACTATTACTCGGCTGTGTTTGAATCACTTGATGCAACATTGCCCAGAGAGAACCCAGACAGGATTAATGTTGAAAAGCACTGCCTTGCTAGAGATATAGTAAACATTGTAGCATGTGAAGGCGAGGAGAGGATAGAGAGGTATGAGGTTGCGGGGAAATGGAGGGCAAGGATGACAATGGCCGGATTCAGACCATGTCCATTGAGCTCATCTGTGAATAACTCAATCCAAGAGCTTCTAAAACAGTACTGCAACCGGTATAAGGTGAAGCAGGAGGGTGGTGCACTTCATTTTGGGTGGGAAGACAAAATCTTAATAGTTGCTTCTGCATGGAGGTGA 1707 0.4569 MSLIRPADSSAPSYGESRIYQAKGSSNPSGLSTQMYSSNKQKFKHVTESNHLDSYNQQSFPESSTAELHALQANVYHPSNSGVPGGAFCPQVSCSSATAHNSYLEKILDPIDSGEDNIRLKLRELESALLNDNDEDDYYYNGGISGPEHNMNIDSEWADSIKDILLLPNSPKDSSSDSNLSYICSNKETSACTSRPTTPKQMLFNCAAALSEGNMEQASTIIATLRRMVSIQGDPPQRIAAYMVEGLAARMAASGQGLYRALKCKEPPTSDRLSAMQILFEVCPCFKFGFMAANGAITEAFKGEKGVHIIDFDINQGSQYITLIQALAAQPAKPCVRITGVDDPESVQRKVGGLKIIGQRLEQLAEACGVPFEFRAIAAKTADITPSMLNCLPGEALLVNCAFQLHHMPDESVSTVNQRDQLLRMIKSLTPKLVTVVEQDVNTNTAPFFPRFIEAYNYYSAVFESLDATLPRENPDRINVEKHCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFRPCPLSSSVNNSIQELLKQYCNRYKVKQEGGALHFGWEDKILIVASAWR* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1522 568 MobiDBLite consensus disorder prediction 14 42 - -
Vvi4g1522 568 MobiDBLite consensus disorder prediction 1 42 - -
Vvi4g1522 568 Pfam GRAS domain family 201 568 IPR005202 -
Vvi4g1522 568 ProSiteProfiles GRAS family profile. 190 568 IPR005202 -
Vvi4g1522 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 174 563 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1522 Vvi-Chr4 22903147 22904853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1522 1 568 GRAS Transcription Factor Family AT1G21450 55.593 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi4g1522 GRAS 1.4e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1522 - - vvi:100854518 1112.83