Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1518 ATGAACTACTCTGCTCTCAGCCGCTCCTCTGCGCTTCATCTTCCTAATCTTCACTCCACCAACCCCACCAGGTCTGTTTCTCTCTCTATTAGGAGCTGCATTGTCACTCAGAATGATGCCATTGAAGGGCAGAGCCTCAACTACTCGGTCACCACCCGCCTGGGCCAACTCACTCCCATTCTTAAGGACTGTTCAATTCGGATTCCTTCCGGACAGTTGTGGATGCTTCTTGGCCCCAATGGTTGTGGTAAATCTACGCTTTTGAAGATTTTGGCTGGGCTTCTGAATCCGACCAGTGGAACTTTGTATGTGAAGAAGCCCAAGAGTTTCGTTTTTCAAAATCCCGACCATCAGGTAGTGATGCCTACAGTAGAAGCAGATGTTGCATTTGGCCTTGGTAAGTTCAACCTGACAATTGAAGAAGTCAGGTCAAGAGTGTCGAAAGCTCTGGATGCTGTGGGCATTTCTGACTACATGCAACGACCTGTTCAGACACTAAGTGGTGGTCAGAAACAAAGGGTTGCCATTGCTGGTGCTTTGGCAGAAGCGTGTAAAGTACTATTGCTAGATGAGCTCACAACATTCTTGGATGAAAATGATCAGGTCGGGGTGATAAAAGCAGTGAAGAACTCTGTGGATAGTTCAGGAGAAGTGACAGCATTATGGGTGACGCATCGTATGGAAGAACTTGAGTACGCAGATGGTGCTGTGTACATGGAAGACGGGAGAGTTGTAATGCATGGTAATGCTGCAAGCATAATGGATTTTGTTAAAGCCAGGCAATCCTCCTACCTCAACCAATTGAAACTTAAATGA 816 0.4657 MNYSALSRSSALHLPNLHSTNPTRSVSLSIRSCIVTQNDAIEGQSLNYSVTTRLGQLTPILKDCSIRIPSGQLWMLLGPNGCGKSTLLKILAGLLNPTSGTLYVKKPKSFVFQNPDHQVVMPTVEADVAFGLGKFNLTIEEVRSRVSKALDAVGISDYMQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDENDQVGVIKAVKNSVDSSGEVTALWVTHRMEELEYADGAVYMEDGRVVMHGNAASIMDFVKARQSSYLNQLKLK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1518 271 SMART AAA_5 70 243 IPR003593 GO:0016887
Vvi4g1518 271 Pfam ABC transporter 61 193 IPR003439 GO:0005524
Vvi4g1518 271 FunFam ABC transporter I family member 10 37 267 - -
Vvi4g1518 271 Gene3D - 37 270 IPR027417 -
Vvi4g1518 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 258 IPR027417 -
Vvi4g1518 271 CDD ABC_cobalt_CbiO_domain1 55 243 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vvi4g1518 271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 266 IPR003439 GO:0005524
Vvi4g1518 271 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524|GO:0016887
Vvi4g1518 271 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 41 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1518 Vvi-Chr4 22853902 22864653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1518 41 271 Calmodulin-binding Proteins AT2G36910 25.100 8.63e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1518 - - vvi:100254018 525.398