Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1515 ATGCCTGCTTGGTGGGGGAGAAAGTCGAGCAAGTGCAAAGAAGAAGTGCAGCAGCAGAACCCAGAGAGCACTCTCTATAATATATCGAAAATCTCGATCAGAAACGACAAGAAGAATGGCAAGGACAAGCCCAAGAGCTTCGATGAGGGGCTGTTTTCGCGAAATTCGCCCAGGAGCAGCAAGGACTATGGGGCGTTGACGGTCAGCGGTGGTGGTGGGTCGTCGGGGTTTTCCGGGTTCGATTCGGATTGTGGAGACAAGATCAGGGGACACCCACTGCCTCTGCCGTCGGCGGGAATTGAACATGGGGTGGGATCTGGGTCGGGGTCGGTTTCGAGTGTTAGCTCTTCTGGGTCGTCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGGGTCACGATCTGCTACATCACCGCTTCATCCTCGGTTTAGTACCTCGAATATAGATTCTCTGACGGGAAAGCAGGAAGAAGGGAGGAGCTGTCATCGGTTGCCCCTTCCGCCGGGTTCTCCTACCAGCCCTTCTACCTTGTCCAGCACTAGGACTTGCGTAGTGACTGAAAGCACAACTTGTAATATGTCAAAGTGGAAGAAAGGGAGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAGTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGGAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGGGTGAAGAAACACTATCAGTTTATTTGGAGTATGTCTCTGGTGGCTCTATCCACAAGTTACTTCAAGAATATGGTCCCTTTAAGGAACCTGTCATTCAAAATTATGCTAGGCAGATTATTTCTGGGCTTGCCTACTTACACGGGAGAAGTACTGTGCACAGGGATATCAAAGGGGCAAACATATTAGTGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACATATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGGTTGTAATGAATACAAATGGCTACAGCCTTGCGGTGGATATTTGGAGCTTAGGATGTACAATTCTTGAAATGGCAACATCAAAACCACCTTGGAGTCAATATGAAGGGGTGGCTGCAATTTTTAAAATTGGAAACAGCAGGGATGTCCCTGAAATTCCCGATCACCTTTCTAATGATGCAAAAAGTTTTGTAAGGCTATGCTTGCAACGGGATCCATCGGCACGGCCAACAGCCTTACAACTACTAGATCACTCTTTTGTTCGAGACCAAGCCACAACAAGAATTGCTAATATTGCTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGAGATTATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCACTACGGAACTATGGACCAGCACACAAGAGCTGCTTTCTTTCTCCTCCTCATCCATCTTATCCTATAGTGGGACAAAGCAGTTACAACTCAAACGATTACTCACTATATCCAACAAGAGCAATCACAAAATATACACATGACCCTTGGTCTGACAACCCCCCATTCAGATCCCTAACACCTAATGGATCCCCAAGAACGAGACCCATTTGA 1872 0.4637 MPAWWGRKSSKCKEEVQQQNPESTLYNISKISIRNDKKNGKDKPKSFDEGLFSRNSPRSSKDYGALTVSGGGGSSGFSGFDSDCGDKIRGHPLPLPSAGIEHGVGSGSGSVSSVSSSGSSDDHPSPHDHAPFGVYRGQGETKSNTRSRSPGPGSRSATSPLHPRFSTSNIDSLTGKQEEGRSCHRLPLPPGSPTSPSTLSSTRTCVVTESTTCNMSKWKKGRLLGRGTFGHVYVGFNSENGQMCAIKEVKVVSDDHTSKECLKQLNQEINLLSQLSHPNIVQYYGSEMGEETLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYARQIISGLAYLHGRSTVHRDIKGANILVGPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSRDVPEIPDHLSNDAKSFVRLCLQRDPSARPTALQLLDHSFVRDQATTRIANIAITKDAFPSTFDGSRTPTALELHSNRTSLTLFDGDYVTKPVGTVSRAAKNSRDSVRTITSLPVSPCSSPLRNYGPAHKSCFLSPPHPSYPIVGQSSYNSNDYSLYPTRAITKYTHDPWSDNPPFRSLTPNGSPRTRPI* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1515 623 SUPERFAMILY Protein kinase-like (PK-like) 215 475 IPR011009 -
Vvi4g1515 623 MobiDBLite consensus disorder prediction 106 121 - -
Vvi4g1515 623 Gene3D Transferase(Phosphotransferase) domain 1 214 501 - -
Vvi4g1515 623 SMART serkin_6 218 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1515 623 FunFam Mitogen-activated protein kinase kinase kinase 216 498 - -
Vvi4g1515 623 MobiDBLite consensus disorder prediction 138 176 - -
Vvi4g1515 623 MobiDBLite consensus disorder prediction 606 623 - -
Vvi4g1515 623 ProSitePatterns Protein kinases ATP-binding region signature. 224 247 IPR017441 GO:0005524
Vvi4g1515 623 ProSiteProfiles Protein kinase domain profile. 218 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1515 623 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 66 480 - -
Vvi4g1515 623 MobiDBLite consensus disorder prediction 34 49 - -
Vvi4g1515 623 Pfam Protein kinase domain 219 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1515 623 MobiDBLite consensus disorder prediction 16 33 - -
Vvi4g1515 623 MobiDBLite consensus disorder prediction 1 203 - -
Vvi4g1515 623 MobiDBLite consensus disorder prediction 600 623 - -
Vvi4g1515 623 CDD STKc_MEKK1_plant 217 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1515 Vvi-Chr4 22814416 22819691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1515 1 499 MAP Kinase Kinase Kinase AT1G53570 59.574 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi4g1515 Pkinase 2.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1515 K04421 - vvi:100243772 1194.87