Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1512 ATGATGCCATCGGGACCATCAACATCAATTGGTGGTTCCCAGTCTGCCTCGGCTGCACTCCTGAGATCGAACTCAGGGATTTTGGCTCAAGGTGGTCCACAGGGAGCATATTCTTCACTTTCTTCAGTTCGGCCACAGTATGACATGAATTTGGTCGGAAATGCACAAAACATCTCCTCTGGCCTCAGTCAATCTCTTGGAAGTGGGGGTTCGAACTCTGGCCTCTCTCATTCAGGGAGTTTTCAACATGGAGGCCTTGATACAGGACCTGAGTTTGATGCGCTTTCTATTGCAGCAAATGACATTGCTTTCGCTCCACCAGCTGCATCATTTCCACAACTGAACAGTGGGAATCCTGGTTCATCCAGCCAAGTTCAAAACCAGCATCCTCTAAACTCTTCTGGGAATCAGGTATTGCCAGATCAACTGCAATCTCAACTCCAACAGCTTGAGCGGCAGAAATTTCACCACGGACAGCAGTTGCTGCAGCAATTCAGCCAACAGCAGCTACATCAATTGCACCCTCAACAGCAGCCATATCAAGCAACTCAAGGTGGGTCGGGGGGTGTGGGTGTGAATGATCAAAATTGCCCACAGCAACAGTTGCAATTATCACAACAGAACCAGGTTGGCAGAGGTATTCCGCCTGTCAAAATTCAACCTAATCGTTTAGACCAACAAATGTTTTTGCAGCAGCAACAGCAACGTCAACAATTTCTTCACATGTCGAGGCAGTCTTCTCACGCTACTGCTGCTCAGTTGAATCTTTTGCAACAGCAGCGTTTGTTGCAGCTGCAACAACAAAAGCAGCAACAACAATTGTTGAAGGCAACTCAGCAGCAACCCCAATTGCAGCCCCAGTTTCAACAGCCAAATCTGCCTGCAAAACTGGTCTATGAACCTGGAATGTGTGCTCAGCGTTTAACTCAGTACATGATTCAGCAGAAGCATAGGCCTGATGGCAACAATATTGAATTCTGGCAGAAATTTGTTGCTGAATTTTTTGCTCCCAATGCAAAGAAAAGATGGTGTATATCACAATATGGAAATAACCGACAAACAAATAGCCCTTTTCCTCAGGATGTCTGGCACTGTGAAATATGCAATCGCAGGCCTGGTCGTGGTTTTGAAACAACTTTTGAAGTTCTCCCCAGGCTATGCAAAATCAAGTATGACAGTGGCACTTTGGAAGAGCTTCTATATTTTGATATGCCCCATGAATATCAGGATGCAGCCGGTCAGATTGTACTAGACTTTGCTAAAGCAGTACAAGAAAGTGTCTTTGAGCAACTACGTGTAGTTCGTGATGGGCAACTTCGTATTGTTTTCTCCCCAGATCTAAAGATCTGCTCTTGGCTGTTTTGTGCTCGGCATCATGAGGAACTTATCCCTCGAAGATCAATCATACCTCAGGTTAGTCAGCTTGGAGTTGTGGCGCAAAAATACCATGCTGCTGCTCAAAATCCATCAAACATTTCAATGCAAGAATTAAAAAATAACTGTAATACGTTTGTCTCATCAGCTCGTCAATTAGCAAAAGCATTGGAAGTGCCATTAGTTAATGATTTAGGATATACAAAGAGATTTGTGCGGTGCCTTCAGATATCAGAGGTTGTGAACTGTATGAAAGATTTGATTGACTATAGCCGAGAAACCGAGAAAGGACCTATAGAATGTTTGGCCGAGTTTCCTCGTAGAAGCAGCCGATCATCTGGGATGCATAACCAATTGGAGGAGGAGCAACACCTTCAGCAGCAAAATACAAGGCAGAGGATGAATAATGATGATTATGCTTTAAGGGGATCAGCCACTCAGGTTTCTGCCTGTAATGGTGTTCCAAGTGTCAGTAATGGCCACAGCATAACATCTACTTCAACATCTGCCACCGCAATTGTTGGGCTTCTCTGCCAGAATTCCATGAACTCCAGGCATGAAAACCAGATGAATAATCCTAATAGTCCCTTTTCCGCAACTCCAGGTCAGATCCCATCTGCTGGGTCCTCAACTACACCACCATCAACACAACTCAACCCCTCCTCTCCTTTCTCGTGTCTGACACCATCCTCATCTCACAATCCCACTCCACTTTCTCAGACTGTCTTAACAGCAGAAGCCACTGCAAACCACATCACTTCAGAAAATTCACCTACAAATATCCTTTTCCAAAAATCCTCTGAGTCAAACGAGGCAGATCCAAATGAACACCTGAGCTCTGTTGAGAGAATAATACAAGAAATTATGAGTTCATCACAGTTTAACAGTGCAGGTAGCATGATCAGTGTAGGTTCCGTTGGAAACAATGTGAAAAATGGTAGTGGGATGACACAAATAAACCACAGTTCTATTGGTGGTGGTGACAGCACAATGGGAAGCAGGATAAATAGCAATTCAAGTGTTGGGGCTGCAGGATTTGGAAACTTTGATGGTGGAATTGGTGTCTCTGCCACAGTTAATAGAATCAGAGCAACCATGGGGAATAACTCTATGACCTCAAGTGTTGAGGTAGGCATGCCATCGATGCCTCAGGATGTTACTATGAACAATAAGCAACAGGATATGAAATCTCTCAATGGGGTTGGAGGAGGATTAAATGATTTCAATAATCTCCGGTTCAACTAG 2619 0.4437 MMPSGPSTSIGGSQSASAALLRSNSGILAQGGPQGAYSSLSSVRPQYDMNLVGNAQNISSGLSQSLGSGGSNSGLSHSGSFQHGGLDTGPEFDALSIAANDIAFAPPAASFPQLNSGNPGSSSQVQNQHPLNSSGNQVLPDQLQSQLQQLERQKFHHGQQLLQQFSQQQLHQLHPQQQPYQATQGGSGGVGVNDQNCPQQQLQLSQQNQVGRGIPPVKIQPNRLDQQMFLQQQQQRQQFLHMSRQSSHATAAQLNLLQQQRLLQLQQQKQQQQLLKATQQQPQLQPQFQQPNLPAKLVYEPGMCAQRLTQYMIQQKHRPDGNNIEFWQKFVAEFFAPNAKKRWCISQYGNNRQTNSPFPQDVWHCEICNRRPGRGFETTFEVLPRLCKIKYDSGTLEELLYFDMPHEYQDAAGQIVLDFAKAVQESVFEQLRVVRDGQLRIVFSPDLKICSWLFCARHHEELIPRRSIIPQVSQLGVVAQKYHAAAQNPSNISMQELKNNCNTFVSSARQLAKALEVPLVNDLGYTKRFVRCLQISEVVNCMKDLIDYSRETEKGPIECLAEFPRRSSRSSGMHNQLEEEQHLQQQNTRQRMNNDDYALRGSATQVSACNGVPSVSNGHSITSTSTSATAIVGLLCQNSMNSRHENQMNNPNSPFSATPGQIPSAGSSTTPPSTQLNPSSPFSCLTPSSSHNPTPLSQTVLTAEATANHITSENSPTNILFQKSSESNEADPNEHLSSVERIIQEIMSSSQFNSAGSMISVGSVGNNVKNGSGMTQINHSSIGGGDSTMGSRINSNSSVGAAGFGNFDGGIGVSATVNRIRATMGNNSMTSSVEVGMPSMPQDVTMNNKQQDMKSLNGVGGGLNDFNNLRFN* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1512 872 MobiDBLite consensus disorder prediction 169 196 - -
Vvi4g1512 872 MobiDBLite consensus disorder prediction 110 138 - -
Vvi4g1512 872 MobiDBLite consensus disorder prediction 63 83 - -
Vvi4g1512 872 Pfam LIM-domain binding protein 307 560 IPR029005 -
Vvi4g1512 872 MobiDBLite consensus disorder prediction 63 87 - -
Vvi4g1512 872 PANTHER LIM DOMAIN-BINDING PROTEIN 216 859 IPR029005 -
Vvi4g1512 872 MobiDBLite consensus disorder prediction 577 591 - -
Vvi4g1512 872 MobiDBLite consensus disorder prediction 642 696 - -
Vvi4g1512 872 MobiDBLite consensus disorder prediction 565 591 - -
Vvi4g1512 872 MobiDBLite consensus disorder prediction 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1512 Vvi-Chr4 22756099 22765929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1512 294 782 C2H2 Transcription Factor Family AT1G43850 54.598 2.60e-163 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1512 - - vvi:100266085 1499.95