Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1508 ATGGGAAAAACATCGCTCCCTCCTGGGTTTCGTTTTCATCCAATGGATGACGAATTGGTTATGTATTATCTCAAGAAGAAGGTAATGGGGAAAAAGATGCCTTTTGAAGTCATTTCGGAGCTGGACATATACAAGTTTGTTCCACAGGATCTGCCAGATAAATCTTGCTTGAAAAGTAGGGATCGAGAATGGTACTTCTTTTGCCCCAGAGCGAGGAAATATGCTAGTGGAGGTAGAATGAATCGAACAACAGAATCTGGATATTGGAAGACCACTGGAAAGGATAGACAAGTTGTTTATGAGAATCGAACTGTGGGACAGATAAGAACTTTGATTTTTCATCAAGGTCGGGCACCAAAAGGGGACAGAACAGATTGGGTGATGCATGAGTATAGACTTGAAGATAAAGTTCTCGTTGACAGAGGAATTGTTCAGGATGCGTTTGTGCTTTGTAAGATTTTCCAGAAGAGTGGTCCAGGACCAAAAAATGGTGCCCAATATGGTGCGCCATTTAATGAAGAAGAGTGGAACAGTGAGGATGAAGCTGATCATATAGAATCTTTACCTTTTTCTTCCATAGACGTGCCTGCAATGGTGCTTAATGACAACCAAAGCAATTCCATTTTAAGAGACACAGTTGGCCCTGAGGATACGCCTAGTGGGTTTCCATCTAACTCAGGTCCATCTCAAAGTCTTCCATCTGCTGACATGGTGCTTCCATCAGTTCCAGATGGTGATATTTTTGAGCTTCCAGTTGATAATGAGCTTATGTCAATGCTTGACATGTTTGAAGATTCCAATGAGAATGATGAAAATGAGGTGGATAAACCCAGCCATGCTCAAAATGTGGACAATGCATTACCTAATGTGGATGATGCATTAACTGGGGAAGGAAATGATATTTTTAAGGACTTAGGGGACCTGGGCAAGCTGGCAGAGATGAATGAAGATGGATTTAATTTCTCTAGTAGTCACAAAGGCAACCATTCTCTGGATCAGTGGCCCCCTGCTGATTCTTTTCTGGAGTTACGTGATCTTGATCATCCATTGAAAATCACTGTCGAAGGTAGTGGATCTGGTTTTGTCCCGCCTGGTGGTGTTTGCATGGATTGCGACTGTTGCAATAACTCTGAACACTTTGATCATCCATTTAATGATTTTGGTGTGAGGCATCATGCTTCTGCATCAATTCCTAATCCTCCTGTGCTGGCGGATAGGTCTTATGGGTTTGAGAATCTGATGGATGTGTTTTCAAAGAGATGTGTTGGAGAAAATGCAAAGCAGGGATATGGGGGATATGAATCTGCATCATACAGCACTGAACAATCTGAACCAGACAGTGGACATGTGGCTCAAACCCACAAAAGAGGAGAACAGCAAACAAAATATTATTCAAGGTTCCAACAATTGTTGGAGTCCATCCCCAGTCGACCTGCTTCAGCAGCAGAGCATCCTGGTTCTAGCAACGGACTGAGAAAAAATACAAGAACTGTCTTGTGTGCTAGTGTTGGGGTTGGTGGGTGCACCGAGGAGGCACTGTCAGACAAGTTGGAGTTGTCATGCCTGGGTTATTGTGGGTGCAACCTGCATAGGAGGAGGGAGTTTAGGAAGGAAGCAGCTCTCTGGGACGGGAATTTCATGTTTGTCCTATTCTTGGGGATGCTCTCAGCTTTAATGTGGGTGTTCATAGCTGCAATCCTCATGAAACTTGGTAGGTTTGCATGGGACCTCCTCCTTGCTTAG 1743 0.4366 MGKTSLPPGFRFHPMDDELVMYYLKKKVMGKKMPFEVISELDIYKFVPQDLPDKSCLKSRDREWYFFCPRARKYASGGRMNRTTESGYWKTTGKDRQVVYENRTVGQIRTLIFHQGRAPKGDRTDWVMHEYRLEDKVLVDRGIVQDAFVLCKIFQKSGPGPKNGAQYGAPFNEEEWNSEDEADHIESLPFSSIDVPAMVLNDNQSNSILRDTVGPEDTPSGFPSNSGPSQSLPSADMVLPSVPDGDIFELPVDNELMSMLDMFEDSNENDENEVDKPSHAQNVDNALPNVDDALTGEGNDIFKDLGDLGKLAEMNEDGFNFSSSHKGNHSLDQWPPADSFLELRDLDHPLKITVEGSGSGFVPPGGVCMDCDCCNNSEHFDHPFNDFGVRHHASASIPNPPVLADRSYGFENLMDVFSKRCVGENAKQGYGGYESASYSTEQSEPDSGHVAQTHKRGEQQTKYYSRFQQLLESIPSRPASAAEHPGSSNGLRKNTRTVLCASVGVGGCTEEALSDKLELSCLGYCGCNLHRRREFRKEAALWDGNFMFVLFLGMLSALMWVFIAAILMKLGRFAWDLLLA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1508 580 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Vvi4g1508 580 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 257 - -
Vvi4g1508 580 MobiDBLite consensus disorder prediction 207 236 - -
Vvi4g1508 580 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Vvi4g1508 580 FunFam Nac domain-containing protein 86 15 159 - -
Vvi4g1508 580 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vvi4g1508 580 MobiDBLite consensus disorder prediction 433 447 - -
Vvi4g1508 580 MobiDBLite consensus disorder prediction 267 295 - -
Vvi4g1508 580 MobiDBLite consensus disorder prediction 207 240 - -
Vvi4g1508 580 MobiDBLite consensus disorder prediction 433 458 - -
Vvi4g1508 580 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1508 Vvi-Chr4 22707276 22712802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1508 1 267 NAC Transcription Factor Family AT5G64060 49.296 7.98e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi4g1508 NAM 4.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1508 - - vvi:100854361 1187.94