Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1499 ATGGCGAGCGCAGATGTGGAGGCCGTCGACTTCGAGCCGGAGGACGATGACCTCATGGACGAGGATGGCGCCGTCGACGTCGACAACTCCTCCCCGAGAGCTCCCCTCCCCAAGCTCAAGTCCGCTATCACCGGTGGCGCCCCCTCTTCACTTGCCGCCGCCCCCAAGAAGACCAAGGGCCGCGGCTTCCGTGACGACACCGACGCCGACCGCAACTCCCGATTTGCCGCCCGTGACTTCGACTCACTGGACTCCGACGGTGGTCCTGGTCCGCAGCGATCCATTGAAGGATGGATTATTCTGGTCACTGGAGTACACGAAGAGGCACAAGAGGATGATCTGCAAAACGCGTTTGGTGAGTTTGGAGAGGTTAAGAATTTGCATTTAAATCTTGATCGTCGTACCGGGTTCGTAAAGGGGTACGCATTGATTGAATATGAGAACCTCGAGGAAGCACAGGCTGCAATTTCTGCCATGAATGGGACTGAACTTCTCACACAGACAATCAGTGTTGACTGGGCCTTCAGCAATGGGCCCTTCAAAAGAAGGAATATGAGGAGAAGATCACCAAGGGGCCATCGATCCAGGAGTCCCAGGAGGAGATACTAA 609 0.5583 MASADVEAVDFEPEDDDLMDEDGAVDVDNSSPRAPLPKLKSAITGGAPSSLAAAPKKTKGRGFRDDTDADRNSRFAARDFDSLDSDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEVKNLHLNLDRRTGFVKGYALIEYENLEEAQAAISAMNGTELLTQTISVDWAFSNGPFKRRNMRRRSPRGHRSRSPRRRY* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1499 202 Gene3D - 47 189 IPR012677 -
Vvi4g1499 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Vvi4g1499 202 MobiDBLite consensus disorder prediction 1 91 - -
Vvi4g1499 202 CDD RRM_RBM8 92 179 IPR033744 GO:0003729
Vvi4g1499 202 PRINTS RNA binding motif protein 8 family signature 163 175 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vvi4g1499 202 PRINTS RNA binding motif protein 8 family signature 52 64 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vvi4g1499 202 PRINTS RNA binding motif protein 8 family signature 145 161 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vvi4g1499 202 PRINTS RNA binding motif protein 8 family signature 89 103 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vvi4g1499 202 PANTHER RNA-BINDING PROTEIN 8A 5 201 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vvi4g1499 202 MobiDBLite consensus disorder prediction 182 202 - -
Vvi4g1499 202 MobiDBLite consensus disorder prediction 58 81 - -
Vvi4g1499 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Vvi4g1499 202 SUPERFAMILY RNA-binding domain, RBD 91 201 IPR035979 GO:0003676
Vvi4g1499 202 MobiDBLite consensus disorder prediction 8 24 - -
Vvi4g1499 202 SMART rrm1_1 99 172 IPR000504 GO:0003723
Vvi4g1499 202 FunFam RNA-binding protein 8A-like 29 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1499 Vvi-Chr4 22479236 22484946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1499 100 174 Eukaryotic Initiation Factors Gene Family AT3G11400 32.000 1.44e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1499 K12876 - vvi:100260882 364.77