LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g1497	ATGTCAGGCACAGCTGGTCAAGTTATACGTTGCAAAGCCGCGGTGGCATGGGAAGCGGGAAAGCCATTGGTGATCGAAGAAGTGGAAGTGGCGCCTCCGCAGGCCATGGAGGTTCGTCTGAAGATTCTCTTCACCTCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGGGATTGTGGAGAGCGTGGGTGAAGGTGTGACAGATCTCCAACCTGGAGACCATGTTCTTCCTGTATTCACTGGCGAATGCAAGGACTGCCGGCATTGCAAATCGGAGGAGAGTAACATGTGTGACCTCCTCAGGATAAACACCGACAGGGGCGTGATGCTCAATGATAACAAGTCAAGATTCTCTATTAATGGAAAACCCATTTACCATTTTGTGGGGACTTCCACATTTAGCGAATACACTGTGGTTCATGTTGGTTGCGTCGCTAAGATCAACCCTGCTGCCCCACTCGACAAAGTTTGCGTTCTCAGTTGTGGAATCTCAACAGGTCTCGGTGCTACATTGAATGTTGCAAGACCATGGAAGGGTTCATCAGTCGCCATTTTTGGTTTAGGAGCTGTGGGGCTTGCTATGTCAAGCACAGCTGGTCAAGTTATACGTTGCAAAGCCGCGGTAGCATGGGAAGCAGGAAAGCCATTGGTGATAGAAGAAGTGGAAGTGGCGCCTCCACAGGTCATGGAGGTTCGTCTGAAGATTCTCTTCACCTCCCTCTGCCATACTGATGTTTACTTCTGGGAAGCCAAGGGACAAACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGGGATTGTGGAGAGCGTGGGTGAGGGTGTCACAGATCTCCAACCTGGAGACCATGTTCTTCCTGTATTCACTGGCGAATGCAAGGAGTGCCGGCACTGCAAGTCAGAGGAGAGTAATATGTGTGACCTCCTCAGGATAAACACCGACAGAGGCGTGATGCTCAGTGATAACAAATCAAGATTCTCTATTAACGGAAAACCCATTTACCATTTTGTGGGGACTTCCACATTTAGCGAATACACTGTGGTTCATGTTGGTTGCGTCGCTAAGATCAACCCTGCTGCCCCACTCGACAAAGTTTGTGTTCTCAGTTGTGGAATCTCTACAGGTCTGGGTGCTACATTGAATGTTGCAAAACCATGGAAGGGTTCATCAGTCGCCATTTTCGGTTTAGGAGCTGTGGGGCTTGCTGCTGCTGAGGGGGCTAGAATTGCAGGCGCTTCCAGAATCATTGGGATTGATCTAAACCCTAAGAGATTTAATGACGCAAAGAAATTTGGCGTCACTGAGTTTGTGAACCCAAAGGATCATGACAAGCCTGTTCAAGAGGTGATTGCTGAGATGACCGATGGGGGAGTGGACAGAAGTGTTGAGTGTACCGGAAATGTCAATGCTATGATATCTGCATTTGAGTGTGTTCATGATGGGTGGGGTGTTGCTGTGCTGGTTGGTGTGCCAAACAAAGATGACTCGTTCAAAACGCACCCCGTGAATCTATTGAACGAGAGGACTCTGAAGGGCACTTTCTTTGGCAACTACAAACCCCGTTCCGACCTTCCTTCAGTGGTGGAAAAATACATGAACAAGGAGCTTGAACTGGAGAAATTCATCACACACGAAGTCCCTTTTGCAGAGATCAACAAGGCCTTCGAATATATGCTTAGCGGGGATGGGCTTCGATGCATCATTCGCATGAATGCATAA	1773	0.4867	MSGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKDCRHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGISTGLGATLNVARPWKGSSVAIFGLGAVGLAMSSTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQVMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECRHCKSEESNMCDLLRINTDRGVMLSDNKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGISTGLGATLNVAKPWKGSSVAIFGLGAVGLAAAEGARIAGASRIIGIDLNPKRFNDAKKFGVTEFVNPKDHDKPVQEVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPNKDDSFKTHPVNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFAEINKAFEYMLSGDGLRCIIRMNA*	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g1497	590	SUPERFAMILY	GroES-like	4	186	IPR011032	-
	Vvi4g1497	590	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	279	293	IPR002328	GO:0008270\|GO:0016491
	Vvi4g1497	590	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	379	552	IPR036291	-
	Vvi4g1497	590	Gene3D	-	393	531	-	-
	Vvi4g1497	590	PANTHER	ALCOHOL DEHYDROGENASE	216	586	-	-
	Vvi4g1497	590	Gene3D	-	229	580	-	-
	Vvi4g1497	590	SUPERFAMILY	GroES-like	538	587	IPR011032	-
	Vvi4g1497	590	Pfam	Zinc-binding dehydrogenase	416	542	IPR013149	-
	Vvi4g1497	590	FunFam	Alcohol dehydrogenase class-P	393	531	-	-
	Vvi4g1497	590	Pfam	Alcohol dehydrogenase GroES-like domain	37	161	IPR013154	-
	Vvi4g1497	590	Pfam	Alcohol dehydrogenase GroES-like domain	247	371	IPR013154	-
	Vvi4g1497	590	CDD	alcohol_DH_plants	219	587	-	-
	Vvi4g1497	590	SUPERFAMILY	GroES-like	214	396	IPR011032	-
	Vvi4g1497	590	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	69	83	IPR002328	GO:0008270\|GO:0016491
	Vvi4g1497	590	FunFam	alcohol dehydrogenase 1-like isoform X1	19	182	-	-
	Vvi4g1497	590	Gene3D	-	6	195	-	-
	Vvi4g1497	590	FunFam	alcohol dehydrogenase 1-like isoform X1	229	392	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g1497	Vvi-Chr4	22463343	22470471	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g1497	247	580	Monolignol Biosynthesis Gene Families	AT1G72680	25.959	2.89e-13	69.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g1497	K18857		-	vvi:100267821	749.969