Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1496 ATGTCAAGCACAGCTGGTCAGGTTATACGCTGCAAAGCCGCGGTGGCATGGGAAGCGGGAAAGCCGTTGGTGATCGAAGAAGTGGAAGTGGCGCCTCCACAGGTCATGGAGGTCCGTCTGAAGATCCTCTTCACTTCTCTCTGCCACACCGATGTTTACTTCTGGGAAGCCAAGGGACAAACCCCTTTATTTCCTCGCATATTTGGTCATGAGGCAGGCGGGATTGTGGAGAGCGTGGGTGAGGGTGTGACAGATCTCCAACCTGGAGACCATGTTCTTCCTGTATTCACCGGAGAATGCAAGGAGTGCCGGCATTGCAAGTCGGAGGAAAGTAACATGTGTGACCTCCTCAGGATAAACACAGACAGAGGCGTGATGCTCAGTGATAACAAGTCAAGATTCTCTATTAATGGAAAACCCGTTTACCATTTTGTGGGGACTTCCACATTTAGTGAATACACTGTGGTCCATGTTGGTTGCGTTGCCAAGATCAACCCCGCTGCCCCACTCGACAAAGTTTGTGTTCTTAGCTGTGGAATCTCTACAGGTCTTGGTGCTACCTTGAATGTTGCCAAACCATCGAAGGGTTCATCAATCGCCATTTTCGGTTTAGGAGCAGTGGGGCTTGCTGCTGCTGAGGGAGCTAGAATTGCAGGTGCTGCCAGAATTATTGGGATTGATCTAAACCCTAAGAGATTTAATGACGCAAAGAAATTTGGCGTCACTGAGTTTTTGAACCCAAAGGATCATGACAAGCCTATTCAAGAGGTGATTGCTGAGATGACCGGTGGGGGAGTGGACAGAAGCGTTGAGTGTACCGGAAATGTCAATGCTATGATATCTGCATTCGAGTGTGTTCATGATGGGTGGGGTGTTGCTGTACTGGTTGGTGTGCCAAACAAAGACGACTCATTCAAAACGCATCCCGTGAATCTATTGAACGAGAGGACTCTGAAGGGCACTTTCTTTGGCAACTACAAACCCCGTTCCGACCTTCCTTCAGTGGTGGAAAAATACATGAACAAGGAGCTTGAAGTGGAGAAATTCATCACACATGAAGTCCCTTTTGCAGAGATCAACAAGGCCTTCGAATATATGCTGAGCGGGGATGGGCTTCGATGCATCATTCGCATGGATGCATAA 1143 0.4856 MSSTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQVMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECRHCKSEESNMCDLLRINTDRGVMLSDNKSRFSINGKPVYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGISTGLGATLNVAKPSKGSSIAIFGLGAVGLAAAEGARIAGAARIIGIDLNPKRFNDAKKFGVTEFLNPKDHDKPIQEVIAEMTGGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPNKDDSFKTHPVNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHEVPFAEINKAFEYMLSGDGLRCIIRMDA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1496 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Vvi4g1496 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Vvi4g1496 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Vvi4g1496 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Vvi4g1496 380 Pfam Zinc-binding dehydrogenase 206 333 IPR013149 -
Vvi4g1496 380 CDD alcohol_DH_plants 9 377 - -
Vvi4g1496 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Vvi4g1496 380 Pfam Alcohol dehydrogenase GroES-like domain 37 162 IPR013154 -
Vvi4g1496 380 Gene3D - 19 370 - -
Vvi4g1496 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Vvi4g1496 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vvi4g1496 380 Gene3D - 183 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1496 Vvi-Chr4 22455992 22458543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1496 37 370 Monolignol Biosynthesis Gene Families AT1G72680 24.927 2.56e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1496 K18857 - vvi:100232854 739.954