Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1491 ATGGATAAACACACTTTTGTGGACATCAACCACAGTAACTTCACAAACAATACTTGGGAAGTTGACTTGGCTATGGAAGAGCAGATCCTCCATGACCATCATCTTCCTTTTGATGCAGTTTGGCCTAATTTTCCTCTTCCAACACACAACATAACAGCAGCAGCATCATCATCAAGTCAAATATCTGCTTCGGTTCTACTTGGTGATCAAATGGGAAATCTGTTGGAAGAAGATGAGGAGCCAGAAGAAGAGCTAGGAGCCATGAAAGAGATGATGTACAAGATTGCAGCGATGCAGCCAGTGGACATCGATCCAGCCACAATTCGGAAACCTAAGAGGCGAAATGTAAGAATCAGTGATGATCCACAGAGTGTAGCAGCACGCCACCGGAGAGAAAGGATCAGCGAGAAAATTCGGATTCTCCAAAGACTCGTCCCAGGTGGAACAAAAATGGACACAGCTTCAATGTTAGATGAGGCCATCCGCTATGTCAAGTTCCTAAAGAGACAAATTCGCCAGCTACAATCCAATCATCACCCATTACCCACCGATGTCACGGCCTGCCTATCCACCCCAGATTGGGCAGTTACATCAACCAAACTTCTTGGTTCCACCTCCTCATCATCAATGGAAGCACCCGGCGGAGGCGGATTCAGCTTCAGAGCTCTTTAA 672 0.4628 MDKHTFVDINHSNFTNNTWEVDLAMEEQILHDHHLPFDAVWPNFPLPTHNITAAASSSSQISASVLLGDQMGNLLEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRQLQSNHHPLPTDVTACLSTPDWAVTSTKLLGSTSSSSMEAPGGGGFSFRAL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1491 223 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 36 213 IPR045843 GO:0003700|GO:0006355
Vvi4g1491 223 FunFam BHLH transcription factor 121 183 - -
Vvi4g1491 223 MobiDBLite consensus disorder prediction 204 223 - -
Vvi4g1491 223 Pfam Helix-loop-helix DNA-binding domain 128 167 IPR011598 GO:0046983
Vvi4g1491 223 CDD bHLH_AtIND_like 119 177 - -
Vvi4g1491 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 182 IPR036638 GO:0046983
Vvi4g1491 223 Coils Coil 157 177 - -
Vvi4g1491 223 Gene3D - 121 188 IPR036638 GO:0046983
Vvi4g1491 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Vvi4g1491 223 SMART finulus 124 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1491 Vvi-Chr4 22358786 22359457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1491 85 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 79.825 7.28e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi4g1491 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1491 - - vvi:100242028 428.328