Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1489 ATGGATTCTCTCTTCTGTCCCATTCTTCTTTCTCTTCTCTTTCTTTCCACTTCCTCCGCCGCAGTCCGTCAAGGTGCGCCGCATTTCACCCAACAAGCCACCTCTCCTAAGCCCCAGATCCAACAGGCCTGTAAGGCCACGCGTTTCCCAGAAACATGTGAGGCCTTTCTCCGAGGATCGGGTCATGTCCCTCCGAACCCCAGTCCCGTCCAAATCATCCAATCCGCCATCTGGGTCTCTTCAGAAAATCTCAAAACAGCGCAGTCGATGGTGAAGTCGATCCTGGACTCGTCCGCAGGGAACAAGAACAGGACGACGGCGGCGAAGAACTGCCTGGAGGACTTGCATAACTCCGAGTACCGAATCTCATCGACGGCGAAGGCTCTGCCACTTGGGAGGATCAAGGATGCGAGGGCCTGGATGAGCTCCGCCCTAGTCCACCAGTACAGTTGTTGGTCAGCCCTCAAGTACGCCAACGACACCCAGCAGGTGAACAGCACGATGTCGTTTTTGAACTCCACCCTCATTGTGATGACCAGCAATGGCCTAAGCATGATGGCTTCTTACGACATCTTCGGGAACGAAACCGGGTCCTGGAGACCCCCCAAAACGGAGCGCGACGGCTTCTGGGAGGCCTCCGGTGGCGACCAATCCAAGTTGGGGTTCAAACGCGGAGTTCCGACGGGTCTGAAGCCAAACGCGACGGTGTGTAAGGGAGGCGACGGGTGTTACAAGACGGTGCAGGAAGCGGTGAATGCGGCACCGGACAACGACAGTAGCCGGAAGTTTGTGATTAGGATCCAGGAAGGGGTCTACGAGGAAACGGTCAGGGTGCCGTTGGAGAAAAAGAACGTGGTGTTCCTGGGAGATGGTATGGGCAAAACGGTAATTACGGGCTCTTTGAATGTGGGCCAACCTGGAATTTCCACCTACAACTCTGCAACCGTCGGGGTTGCGGGCGATGGGTTCATGGCGAGTGGGCTCACAATGGAGAACACGGCCGGCCCTGATGAACACCAAGCCGTAGCTTTCAGATCAGACAGCGATTTATCGGTAATCGAAAACTGCGAATTCATAAGCAATCAAGACACCCTCTACGTTTACTCCCTTCGCCAGTTCTACAAGTCATGCCGCATCCAAGGCAACGTGGACTTCATCTTCGGCAACTCCGCTTCAATCTTCCACGACTGCCTCATCCTGGTCAGCCCCAGGCCACTCGATCCCGAGAAAGGCGAAACAAATGCTGTGACAGCCCATGGAAGAACGGACCCTGCTCAGACCACAGGCCTGGTTTTCCAAAACTGTGTGGTAAATGGCACCGAGGAGTACATGAAATTGTACCATAGCAACCCCACGGTACACAAGAACTTCTTGGGGCGGCCATGGAAGGAGTATTCCAGGACTGTTTTCATACATTGTAACTTGGAAGTTCTTATTACACCGCCAGGGTGGATGCCATGGAGTGGGGATTTTGCATTAGCGACACTTTATTATGGGGAATTTGAGAATAGGGGACTGGGTGCTAATTTATCTTCAAGAGTGGAATGGAGTAGCCGAATTCCGGCTAAGCATGTTGGCACGTATTCGTTGAAGAATTTCATTCAAGGTGATGAGTGGATTCCACATATTCTTGATGATGAGGCCACTGCAATTAATCACTGA 1662 0.5295 MDSLFCPILLSLLFLSTSSAAVRQGAPHFTQQATSPKPQIQQACKATRFPETCEAFLRGSGHVPPNPSPVQIIQSAIWVSSENLKTAQSMVKSILDSSAGNKNRTTAAKNCLEDLHNSEYRISSTAKALPLGRIKDARAWMSSALVHQYSCWSALKYANDTQQVNSTMSFLNSTLIVMTSNGLSMMASYDIFGNETGSWRPPKTERDGFWEASGGDQSKLGFKRGVPTGLKPNATVCKGGDGCYKTVQEAVNAAPDNDSSRKFVIRIQEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVAGDGFMASGLTMENTAGPDEHQAVAFRSDSDLSVIENCEFISNQDTLYVYSLRQFYKSCRIQGNVDFIFGNSASIFHDCLILVSPRPLDPEKGETNAVTAHGRTDPAQTTGLVFQNCVVNGTEEYMKLYHSNPTVHKNFLGRPWKEYSRTVFIHCNLEVLITPPGWMPWSGDFALATLYYGEFENRGLGANLSSRVEWSSRIPAKHVGTYSLKNFIQGDEWIPHILDDEATAINH* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1489 553 SUPERFAMILY Pectin lyase-like 229 544 IPR011050 -
Vvi4g1489 553 FunFam Pectinesterase 4 230 545 - -
Vvi4g1489 553 Pfam Pectinesterase 233 537 IPR000070 GO:0030599|GO:0042545
Vvi4g1489 553 PANTHER PECTINESTERASE 17 541 - -
Vvi4g1489 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 188 IPR035513 -
Vvi4g1489 553 SMART PMEI_2 35 185 IPR006501 GO:0004857
Vvi4g1489 553 NCBIfam pectinesterase inhibitor domain 10 185 IPR006501 GO:0004857
Vvi4g1489 553 FunFam Probable pectinesterase/pectinesterase inhibitor 51 38 188 - -
Vvi4g1489 553 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
Vvi4g1489 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 186 IPR035513 -
Vvi4g1489 553 CDD PMEI-like_3 43 190 - -
Vvi4g1489 553 Gene3D - 228 545 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1489 Vvi-Chr4 22313152 22314984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1489 33 539 Carbohydrate Esterase AT5G09760 67.451 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1489 - - vvi:100259136 1128.24