Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1488 ATGCACTTCAGAAACCCTATAAAACCCCACTCCTCTAAAGTCCTTATCCTCTCCGTGGCTTCTATCCTCCTTCTCGCTCTTCTCTCCTTCCTCCTCTTCTTCTCCCTCTCCTCCGCCTCTCACCACCATAGCCCTCGCCACTCCCCCCCGCATTTCCCCCAACCCATCACCCCCAGGCCCTCCACCGCCTCTGTTCCTCCCCAGATCCACCAGGCCTGCGCCGCTACGCGTTACCCAGAAACCTGCGACGCCTCTCTGATCGCATCCAATCGGGTCCCTCCCGACCCCAAGCCCATCGATGTCATCCTATCAGCCTTATGGGTCTCCTTGGAGAATCTCAAGACGGCGCAGTCCATGGTGAAGGACATCCTGGACGCATCCGCAGGGAACCAGAATCGGACGACGGCGGCGAAGAACTGCCTGGAGGTGTTGCATAACTCCGAGTACCGGATCTTATCGACAATGGAGGCTCTGCCACATGGGAAGATCAAGGACGCGAGGACCTGGATGAGCGCGGCTCTACTATACCAGTACGCTTGCTGGTCAGCGTTGACGTTCGTCAACGACACTCAACAGGTGAACAAAACGATATCGTTTTTAGATTCCCTCCTTGGGCTAAGCAGCAACGGTCTAAGCATGATGGCATCTTACGATATTTTCGGGAACGACATCGGGTCCTGGAGGCCCCCCAAAACAGAGCGGGACGGCTTCTGGGAGCCTTCCGGGTCGAGCGAAGGATCCGGATTAGGGTTCAAAGGCGGAGTTCCGACTGGTCTTCGACCAGACGCCATGGTGTGCAAGGGCGGCAACGGGTGCTACAAGACGGTGCAGGAAGCGGTGGACGCCGCGCCGGCTAAAGCCGGAGATCGAAAGTTCGTGATTCGGATCCGAGAAGGGGTCTATGAGGAGACGGTTCGGGTGCCGTTGGAAAAAAAGAACGTGGTGTTTTTGGGAGATGGGATGGGTAAAACGGTAATTACGGGATCGTTGAATGTGGGCCAGCCTGGAATTTCCACCTACAACACAGCGACTGTCGGTGTAAGTGGTGATGGGTTCATGGCTAGTGGTCTCACATTCCAAAACACAGCCGGTCCTGACGCCCACCAAGCTGTAGCTTTCAGATCAGGTAGCGATTTATCAGTGATTGAGAACTGTGAATTCTTAGGCAATCAAGACACTCTCTACGCTGAATCCCTTCGCCAGTTCTACAAATCATGCAACATCCAAGGCAACGTGGACTTCATCTTTGGCAACTCCGCTTCAATCTTCCAAGACTGCCTCATCCTAATCCGCCCCAGGCAACTCAACCCAGAAAACGGGGAGAACAACGCTGTAACAGCACATAGTCGAACAGACCCTGCCCAAACCACAGGCTTTGTTTTCCAAAATTGTGTGGTCAATGGCACCGACGACTACATGAAGTTGTACTACAGCAACCCTAAAGTACACAAGAACTTCTTGGGGAGGCCATGGAAGGAGTTTTCAAGGACTGTTTTTATCCAGTGTTTGTTGGAGGCTCTTGTGACACCACAAGGGTGGCTGCCATGGAGTGGTGACTTTGCATTAGAAACACTTTATTATGGGGAATTCAACAATTCTGGATTGGGAGCTAATTTGTCTGCAAGAGTAACATGGAGTAGCCAGATTCCTGCTCAGCACATAAACATGTACTCGGTACAGAATTTCATTCAAGGTAATGAGTGGATTCCTACAACTTCTTGA 1722 0.525 MHFRNPIKPHSSKVLILSVASILLLALLSFLLFFSLSSASHHHSPRHSPPHFPQPITPRPSTASVPPQIHQACAATRYPETCDASLIASNRVPPDPKPIDVILSALWVSLENLKTAQSMVKDILDASAGNQNRTTAAKNCLEVLHNSEYRILSTMEALPHGKIKDARTWMSAALLYQYACWSALTFVNDTQQVNKTISFLDSLLGLSSNGLSMMASYDIFGNDIGSWRPPKTERDGFWEPSGSSEGSGLGFKGGVPTGLRPDAMVCKGGNGCYKTVQEAVDAAPAKAGDRKFVIRIREGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVSGDGFMASGLTFQNTAGPDAHQAVAFRSGSDLSVIENCEFLGNQDTLYAESLRQFYKSCNIQGNVDFIFGNSASIFQDCLILIRPRQLNPENGENNAVTAHSRTDPAQTTGFVFQNCVVNGTDDYMKLYYSNPKVHKNFLGRPWKEFSRTVFIQCLLEALVTPQGWLPWSGDFALETLYYGEFNNSGLGANLSARVTWSSQIPAQHINMYSVQNFIQGNEWIPTTS* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1488 573 Gene3D - 257 573 IPR012334 -
Vvi4g1488 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 216 IPR035513 -
Vvi4g1488 573 CDD PMEI-like_3 72 218 - -
Vvi4g1488 573 FunFam Probable pectinesterase/pectinesterase inhibitor 51 67 216 - -
Vvi4g1488 573 NCBIfam pectinesterase inhibitor domain 66 212 IPR006501 GO:0004857
Vvi4g1488 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 214 IPR035513 -
Vvi4g1488 573 MobiDBLite consensus disorder prediction 44 66 - -
Vvi4g1488 573 FunFam Pectinesterase 353 573 - -
Vvi4g1488 573 FunFam Putative pectinesterase/pectinesterase inhibitor 51 256 349 - -
Vvi4g1488 573 Pfam Pectinesterase 262 566 IPR000070 GO:0030599|GO:0042545
Vvi4g1488 573 PANTHER PECTINESTERASE 28 571 - -
Vvi4g1488 573 SMART PMEI_2 64 213 IPR006501 GO:0004857
Vvi4g1488 573 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Vvi4g1488 573 Pfam Plant invertase/pectin methylesterase inhibitor 69 210 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1488 Vvi-Chr4 22295902 22298024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1488 55 568 Carbohydrate Esterase AT5G09760 67.829 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1488 - - vvi:100254006 1082.4