Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1487 ATGCACTCCAGAAAGCCTATAAAGCCCCACTCCTTCTCTAAATTCCTTATCCTCTCCATGGCTTCTCTCTTCCTTCTCGCTCTTCTCTCCCTCTTCCTCTTCTTCTCCCTCTCCTCCGCCTCTCACCACCATAGCCCTCGCCACTCCCTCCCGCATTTCCCCCAACCCATCACCCCCCAGCCCTCCACCGCCTCTGTTCCTCCCCAGATCCACCAGGCCTGCGCCGCTACGCGTTACCCAGAAACCTGCGAGGCCTCTCTGATCGCTTCCGATCGGGTCCCTCCCGATCCCAAGCCCATCGATGTCATCCAATCAGCCTTATGGGTCTCCTTGGAGAATCTCAAGACGGCGCAGTCCATGGTAAAGGACATCCTGGACGCATCCGCACGGAACCTGAATCGGACGACGGCGGCGAAGAACTGCCTGGAGGTGTTGCATAACTCCGAGTACCGGATCTCATCGACGATGGAGGCTCTGCCACATGGGAAGATCAAGGACGCGAGGGCCTGGGTGAGCGCGGCTCTACTATACCAGTACGATTGCTGGTCGGCTTTGAAGTACGCCAACGACACTCAACAGGTGAACAAAACGATGTCGTTTTTAGACTCCCTTCTTGGGCTGAGCAGCAACGGTCTAAGCATGATGGCATCTTACGATATTTTCGGGAACGACATCGGGTCCTGGAGGCCCCCCAAAACGGAGCGAGACGGCTTCTGGGAGCCTTCCGGGTTGGGCGAAGAATCCGGATTGGGGGTCAAAGGTGGAGTTCCGACTGGTCTTCCGCCGGACGCCACCGTGTGCAAGGACGGAAACGGGTGCTACAAGACGGTGCAGGAAGCGGTGGACGCCGCGCCGGCTAACGCCGGTGACCGGAAGTTCGTGATTCGGATTCGAGAAGGGGTCTATGAGGAGACGGTTCGGGTGCCGTTGGAAAAAAAGAACGTGGTGTTTTTGGGAGATGGGATGGGTAAAACGGTAATTACGGGATCGTTGAATGTGGGCCAGCCTGGAATTTCCACCTACAACACAGCCACTGTCGGTGTGAGTGGTGATGGGTTCATGGCCAGTGGTCTCACATTCCAAAACACAGCCGGTCCTGATGCCCACCAAGCTGTAGCTTTCAGATCAGGTAGCGATTTATCAGTGATTGAGAACTGTGAATTCTTAGGCAATCAAGACACTCTCTACGCTCACTCCCTTCGCCAGTTCTACAAATCATGCAACATCCAAGGCAACGTGGACTTCATCTTTGGCAACTCCGCTTCAATCTTCCAAGACTGCCTCATCCTAATCCGCCCCAGGCAACTCAAACCAGAAAAAGGGGAGAACAACGCTGTGACAGCACATGGTAGAACAGACCCTGCCCAAACCACAGGCTTTGTTTTCCAAAATTGTGTGGTCAATGGCACCGACGACTACATGAAGTTGTACTACAGCAACCCTAAAGTACACAAGAACTTCTTGGGGAGGCCATGGAAGGAGTTTTCAAGGACTGTTTTTATCCGGTGCTTCTTGGAGCCTCTTGTCACACCACAAGGGTGGCTGCCATGGAGTGGTGACTTTGCATTAAAAACACTTTATTATGGGGAATTCAACAATTCTGGATTGGGAGCTAGTTTGTCTGCAAGAGTAACATGGAGTAGCCAGATTCCTGCTCAGCACTTAAACACGTATTCAGTACAGAATTTCATTCAAGGTAATGGGTGGATTCCTACAACTTCTTGA 1725 0.5299 MHSRKPIKPHSFSKFLILSMASLFLLALLSLFLFFSLSSASHHHSPRHSLPHFPQPITPQPSTASVPPQIHQACAATRYPETCEASLIASDRVPPDPKPIDVIQSALWVSLENLKTAQSMVKDILDASARNLNRTTAAKNCLEVLHNSEYRISSTMEALPHGKIKDARAWVSAALLYQYDCWSALKYANDTQQVNKTMSFLDSLLGLSSNGLSMMASYDIFGNDIGSWRPPKTERDGFWEPSGLGEESGLGVKGGVPTGLPPDATVCKDGNGCYKTVQEAVDAAPANAGDRKFVIRIREGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVSGDGFMASGLTFQNTAGPDAHQAVAFRSGSDLSVIENCEFLGNQDTLYAHSLRQFYKSCNIQGNVDFIFGNSASIFQDCLILIRPRQLKPEKGENNAVTAHGRTDPAQTTGFVFQNCVVNGTDDYMKLYYSNPKVHKNFLGRPWKEFSRTVFIRCFLEPLVTPQGWLPWSGDFALKTLYYGEFNNSGLGASLSARVTWSSQIPAQHLNTYSVQNFIQGNGWIPTTS* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1487 574 CDD PMEI-like_3 73 219 - -
Vvi4g1487 574 SMART PMEI_2 65 214 IPR006501 GO:0004857
Vvi4g1487 574 Pfam Pectinesterase 263 567 IPR000070 GO:0030599|GO:0042545
Vvi4g1487 574 Pfam Plant invertase/pectin methylesterase inhibitor 70 213 IPR006501 GO:0004857
Vvi4g1487 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 217 IPR035513 -
Vvi4g1487 574 NCBIfam pectinesterase inhibitor domain 48 214 IPR006501 GO:0004857
Vvi4g1487 574 FunFam Pectinesterase 258 574 - -
Vvi4g1487 574 FunFam Probable pectinesterase/pectinesterase inhibitor 51 68 217 - -
Vvi4g1487 574 PANTHER PECTINESTERASE 29 572 - -
Vvi4g1487 574 SUPERFAMILY Pectin lyase-like 260 573 IPR011050 -
Vvi4g1487 574 Gene3D - 259 574 IPR012334 -
Vvi4g1487 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 215 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1487 Vvi-Chr4 22290151 22292255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1487 56 569 Carbohydrate Esterase AT5G09760 69.186 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1487 - - vvi:100257530 1103.2