Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1482 ATGGGTTCCCTTGCTTCTGCTTTAACAGCATTGCACATGGAATTCACTGATGAACTCACCTACATGCCGGGCATGGCTCCTAGATCTGCCAATCAAGCAAAGTTTGAAAATGGTGGCATGCAGGTTCTTTCCAAAGAAGACATAGAAACCTTGGAACACTGCAGGGCTATGTCTAAAAGAGGCGAAGGCCCACCACTTATAGTAGCTTTTGATTCATTTGAAGGTTATACCGTAGAGGCTGATGGCCTGATAAAGGATATGACATTTATTGCTGAATACACAGGCGATGTGGATTACATCAGGAATCGGGAACATGATGATTGTGACAGTATGATGACCCTTCTTTTAGCAACCGACCCATCTAAAAGTCTTGTCATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATCAATGGCATTAACAATCATACTTTGGATGGTAAGAAGAAGCAGAATCTAAAATGTGTGAGATACAGTGTGAATGGTGAATGTCGGGTCCTTTTGGTTGCTACTCGTGATATTGCTAAGGGGGAGAGGCTATATTATGACTATAATGGTTATGAGCATGAATACCCAACCCATCATTTTGTCTAA 597 0.4204 MGSLASALTALHMEFTDELTYMPGMAPRSANQAKFENGGMQVLSKEDIETLEHCRAMSKRGEGPPLIVAFDSFEGYTVEADGLIKDMTFIAEYTGDVDYIRNREHDDCDSMMTLLLATDPSKSLVICPDKRGNIARFINGINNHTLDGKKKQNLKCVRYSVNGECRVLLVATRDIAKGERLYYDYNGYEHEYPTHHFV* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1482 198 CDD SET_ATXR5_6-like 61 198 - -
Vvi4g1482 198 ProSiteProfiles SET domain profile. 64 186 IPR001214 GO:0005515
Vvi4g1482 198 Gene3D SET domain 1 198 IPR046341 -
Vvi4g1482 198 Pfam SET domain 97 186 IPR001214 GO:0005515
Vvi4g1482 198 SUPERFAMILY SET domain 57 186 IPR046341 -
Vvi4g1482 198 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 12 196 - -
Vvi4g1482 198 SMART set_7 64 192 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1482 Vvi-Chr4 22250857 22251875 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi4g1482 SET 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1482 K24406 - vvi:100247284 409.453