Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1481 ATGGCTCCGGCTACCTCCTCCCCGGCAGCGGCTCAGAAGCTCTTCCCCTTCAAAGGCTCCGTCCGCCGCACCGAGGCGCCGCGGCGTCCGTCGCTGCCGGCCAGGAAGTACAAATCGATGGCGGAGATAATGGCGACGGCCAAGTACCTCGTGATCGAACGCGCCGATTACAGCGACGTCCGTTGCGTGCAATGCGGCTCCGGCGACCACGACGATGAGCTGCTTCTCTGCGACAAATGCGACCGTGGCTTCCACATGTCCTGTCTCCGGCCGATCGTCGTTCGCATTCCGATTGGGACGTGGCTCTGCCCTAGCTGTTCTGGCCAGAGACGAGGAAGAAGCCTTTCTCAGACTAAGATTATAGACTTTTTTGGTATTCAAAAGCGCAGTGATGGAATGGGGGAATTTGCTTCTACTCAAGGTACATTGTTATCGTTGATCATCCTGATAAGTATTATTTGA 462 0.5606 MAPATSSPAAAQKLFPFKGSVRRTEAPRRPSLPARKYKSMAEIMATAKYLVIERADYSDVRCVQCGSGDHDDELLLCDKCDRGFHMSCLRPIVVRIPIGTWLCPSCSGQRRGRSLSQTKIIDFFGIQKRSDGMGEFASTQGTLLSLIILISII* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1481 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 120 IPR013083 -
Vvi4g1481 153 Pfam PHD-finger 61 107 IPR019787 -
Vvi4g1481 153 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Vvi4g1481 153 SUPERFAMILY FYVE/PHD zinc finger 34 107 IPR011011 -
Vvi4g1481 153 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 60 112 - -
Vvi4g1481 153 CDD PHD_RSF1 62 106 - -
Vvi4g1481 153 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Vvi4g1481 153 SMART PHD_3 61 107 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1481 Vvi-Chr4 22226489 22227052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1481 59 113 C2H2 Transcription Factor Family AT3G01460 37.500 4.96e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi4g1481 PHD 8.2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1481 K24406 - vvi:100247284 289.656