Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1474 ATGGTGAGGGATAACTTGTTTATTACAGTTCCCAGCCTTTTCCGTTGCCCGATATCTCTGGACGTCATGAAGTCCCCGGTGAGTCTCTGCACCGGCGTCACCTATGACCGCTCGAGCATTCAGAGGTGGCTCGACAACGGCAACAACACTTGTCCGGCCACTATGCAGGTGCTCCACAGTAAGGACTTTGTGCCCAACCACACCCTACAACGCCTCATCCAGATCTGGTCCAACTCGGTCCGCCACCGCTCCAACTCGCCCGACTCCCCCATCCAGCTCGTTCCCTCTCTGTCCCCAGACCAAGCGAGGGACCTGATTAAAGAAATCGAGAGCAAGCCAGAGGACTGTCTCGAATGTATGTCGAAGATTATTTGTTTCGCGAGAGAGTCCGAGGAAAGCCGCAAGTTTCTTGCGAGAATTGATGGATTCGTCTCGTTGCTGGTTGATTTTCTCGGCAGCGGCAATGCTAATTTCCTTGCGCTTGAACAAGTGGTGAGGGTTTTGGACATGATTATAAGTGAGCACGAAGATCATAAGCAGCTGGCGAATTCGATGCTGAAGAGTGATCGCGATTGCTTGTCTTCAATCCTCCTCGTTTTGCAACAAGGAAGCGCGGAATCTAGAATCGCATCTGCTAGGGTTTTGGAGTCGATCGCAATCGATGCTGAATCGAAGCTCTTGATAGCCGAAAAGGATGGATTATTTTCTGAATTGATTCGCATAATGAGCACCGAGACCGATCCTACAATGATAGAATCAACCTTGTCTTGCTTGATCGCAGTATCAATGCCGAGACGCATCCGACCAAAAATCGTGAGACTCGGCGTCGTCAAGCAACTCACGAAATTATTATCCGATCCCAACTGGAGCGTTTCGGTGACCGAGAAGGCTCTGAAACTGCTGGAAATGGCATCATCGTGCAAAGAGGGAAAATCCGAGATATGTGAGAACTCCGACTGCGTATCTGCCATAGTGCAGAAGATGTTGAAGGTGTCGAGCACGGCGACGGAGCACGCCGTGACGATACTGTGGAGCGTGTGCTATTTGTCAAGAGACGACAGGGCTCAGAGCACGGTCACCCAGAACAACGGATTGACCAAGATTTTGGTGCTTATGCAGAGCAATTGCTCGCCGGCGGTGAGGCAACTAGCCGGAGATTTGTTGAAAATATTCAGAGTGAGCTCCAAATCGTGTCTGTCAAGCTATGATACCAAAACAACCCATATCATGCCTTTTTGA 1239 0.5012 MVRDNLFITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHSKDFVPNHTLQRLIQIWSNSVRHRSNSPDSPIQLVPSLSPDQARDLIKEIESKPEDCLECMSKIICFARESEESRKFLARIDGFVSLLVDFLGSGNANFLALEQVVRVLDMIISEHEDHKQLANSMLKSDRDCLSSILLVLQQGSAESRIASARVLESIAIDAESKLLIAEKDGLFSELIRIMSTETDPTMIESTLSCLIAVSMPRRIRPKIVRLGVVKQLTKLLSDPNWSVSVTEKALKLLEMASSCKEGKSEICENSDCVSAIVQKMLKVSSTATEHAVTILWSVCYLSRDDRAQSTVTQNNGLTKILVLMQSNCSPAVRQLAGDLLKIFRVSSKSCLSSYDTKTTHIMPF* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1474 412 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Vvi4g1474 412 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 275 314 IPR000225 GO:0005515
Vvi4g1474 412 SUPERFAMILY ARM repeat 110 392 IPR016024 -
Vvi4g1474 412 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vvi4g1474 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vvi4g1474 412 SUPERFAMILY RING/U-box 6 78 - -
Vvi4g1474 412 Gene3D - 81 401 IPR011989 -
Vvi4g1474 412 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Vvi4g1474 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Vvi4g1474 412 CDD RING-Ubox_PUB 11 63 IPR045210 -
Vvi4g1474 412 PANTHER WDSAM1 PROTEIN 9 400 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1474 Vvi-Chr4 22059531 22060769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1474 1 412 U-box Gene Family AT5G64660 54.394 1.86e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1474 - - vvi:100264434 803.127