Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1472 ATGGGCTTGGTTGGTGTTGAGAGTGGTGAAGAGGGTATAGGGCATTCAGAGCCACCTGACCCTGATGTTCTAGAGATTGATCCTACTTCACGGTACATTCGGTTCAAAGACATTCTCGGGAAAGGCGCATTCAAGACTGTTTACAAGGCATTCGATCAAGTTGATGGAATTGAAGTAGCATGGAACCAAGTTCGCATTGATGAGGTATTACAGTCACCAGATGAGCTGGAAAGGCTGTATTCTGAAGTGCATCTCTTGAAATCATTGAAGCATAAGAACATAATAAAGTTTTATAATTCATGGATTGATGATGGGAACAAGACTGTAAATATCATTACCGAGTTGTTCACCTCGGGTAGCCTTAGACAGTACCGTAAGAAGCATAAGAAGGTTGACATGAAGGCAGTCAAGGGATGGGCAAGGCAAATTTTGATGGGTTTGAACTACCTTCACAATCACAATCCGCCAATTATACATAGAGACCTGAAATGTGATAACATTTTTATTAATGGGAACCAAGGGGAAGTTAAAATAGGAGATCTTGGCCTAGCGACTGTCATGCAACAGGCTAATGCAAGAACTGTGATAGGAACTCCTGAGTTCATGGCGCCTGAGCTGTATGATGAGAATTACAATGAGTTAGCTGATATATATTCCTTTGGGATGTGCATGCTGGAGATGGTAACACTTGAGTATCCTTACAGTGAATGCAGGAACTCAGCTCAGATATACAAGAAGGTTTCAAATGGAATAAAACCTGCCGCCCTGTCTAAAATAAAAGATCTAGAAGTTAAAATGTTTATAGAGAAGTGTCTAGTACCTGCATCTCAAAGATTGTCAGCAAAGAAGCTTCTGAATGATCCCTTCTTCCAAGTTGATGGATTGACTAAGAATCATCCTTTGCAACTTCCTGATATTGTTATTCCAAAGACTGGAGCCTTTGGTGACCGCTGTCTGCTCTCAGAAGGACCTACCAGTTTACAGAATAGACCACTTGCAATGGATCTTGATGCTGTTGATGATGATGAGCTACCCATTATCACCTCTATGGATAATTCTGTTGATGGAGGGCCCTATTCATTATGCATGGAGGTTCAAAGAGCAAAAGGAGGCAATTTTTTCCTGTTGAAAGGCGAGGGAAATGATGAGAACTCTATATCACTAATATTAAGAATAGCTGATCAGAATGGTCGCTTGAGAAATATCCATTTCATGTTCTACCTTGATAGTGATACAGCCCTCTCGGTTTCAAGTGAAATGGTGGAACAACTGGAACTAGCAGACCAGAATGTCACGTTCATTGCAGAGTTGATCGATTTGTTATTAATTATGCTAATACCAACCTGGAAACCTTGTGTCCCAATTGACCATCTGGTTGCTTTGAATAGAATGCAAACCTCTAATGGTCATCATGAGGACTTACAATGTCCAGAACATGGAGAGTGCTTGGTGGGATCATTCGAAGGTGTTTGTGAAACAGATAATCTTTTAAGCCCCCATGTCTACCCCAACTCAACTTCTTTTGAGGGATACATTGAGACAATGCAGGAAAACCCTAAACATTTGAGTCTTGATGAGATCAAGACTCATGCTGATTTAGGGCTTCCAAGCTCAGCCACAGTAGAGGATCATGGTTCTGATATGTCATATGTTTCTGCAACCTCAAATGAAGGGAGTGATAAGAAGTACTCTCATAATGCATATCTCTCTGCAGAGTCAGGATGCATGGATTACAATGAGTATGGATCGAAAAGGGGAGTTAGACAATCCTTGTCGGCAGTGCAAACGAGTTCATGCAACCTTGACAAGGGAAAGGCTACAGACATCGGCAGCAATGGTGCAGTGACTTCTTCAGATTATCCAATTGATTCATCTTTGTCTGACCAGGTTGAAAGTGAGAACATGATATTGGAGCTGGAAATGATTGAGCTGCAATACCACGAGGCAGTTAAGGAAATAGCCAAGAGAAGACAAGAAGCTATCAGGGAGACAAAGAAAAGGTTGTCACAGAAAAGGATAGAGTCAGTTATCTAG 2034 0.414 MGLVGVESGEEGIGHSEPPDPDVLEIDPTSRYIRFKDILGKGAFKTVYKAFDQVDGIEVAWNQVRIDEVLQSPDELERLYSEVHLLKSLKHKNIIKFYNSWIDDGNKTVNIITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLNYLHNHNPPIIHRDLKCDNIFINGNQGEVKIGDLGLATVMQQANARTVIGTPEFMAPELYDENYNELADIYSFGMCMLEMVTLEYPYSECRNSAQIYKKVSNGIKPAALSKIKDLEVKMFIEKCLVPASQRLSAKKLLNDPFFQVDGLTKNHPLQLPDIVIPKTGAFGDRCLLSEGPTSLQNRPLAMDLDAVDDDELPIITSMDNSVDGGPYSLCMEVQRAKGGNFFLLKGEGNDENSISLILRIADQNGRLRNIHFMFYLDSDTALSVSSEMVEQLELADQNVTFIAELIDLLLIMLIPTWKPCVPIDHLVALNRMQTSNGHHEDLQCPEHGECLVGSFEGVCETDNLLSPHVYPNSTSFEGYIETMQENPKHLSLDEIKTHADLGLPSSATVEDHGSDMSYVSATSNEGSDKKYSHNAYLSAESGCMDYNEYGSKRGVRQSLSAVQTSSCNLDKGKATDIGSNGAVTSSDYPIDSSLSDQVESENMILELEMIELQYHEAVKEIAKRRQEAIRETKKRLSQKRIESVI* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1472 677 Gene3D - 384 448 - -
Vvi4g1472 677 SUPERFAMILY Protein kinase-like (PK-like) 34 333 IPR011009 -
Vvi4g1472 677 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Vvi4g1472 677 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Vvi4g1472 677 Coils Coil 651 671 - -
Vvi4g1472 677 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 671 - -
Vvi4g1472 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vvi4g1472 677 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Vvi4g1472 677 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1472 677 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Vvi4g1472 677 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1472 677 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1472 677 CDD STKc_WNK 31 290 - -
Vvi4g1472 677 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1472 Vvi-Chr4 21994690 21997682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1472 133 487 MAP Kinase Kinase Kinase AT1G49160 68.451 9.61e-177 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi4g1472 Pkinase 2.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1472 K08867 - vvi:100259251 1332.39