Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1471 ATGCTCGATTCAGGGAATTTTGTGCTCTATAATTCCAAACAAGAGATCATATGGCAGAGTTTTGATCACCCAACTGACACCCTTTTATCAGGTCAGCGTCTCCAGGCGGGAGCAGAGCTCGTCTCCAGTGTCTCAGAAAAAAACTACTCAACTGGTATGTTCCAGTTGAAGATGCAGCATGATGGAAACCTTGTACAGTACCCAACAAATGTTCCAGAAGTAGTTGAATATGCTTATTGGGCATCTGACACACATGGAGAAGGAGATAATGCAACACTAAATCTTGATGCTGATGGCTATCTGTACTTACTCAATGCCACCGGCTTCAATATAAAGAACCTAACAGATGGAGGAGGTCCACAGGAAGAAACAATCTATCTTATGAAAATTGATGTGGATGGGATTTTCAGATTGTATTCTCGGGGTTTGGATCAGAGCAGCGAATGGTCAGTGGAATGGTCATCCTCAATTGATAAATGCGATCCTAAAGGCTTGTGTGGCCTGAATAGTTATTGCAGTTTAATGGATCAAGAGCCTGTTTGCACTTGTCTCCCTGGCTTTGATTTTGTTGATAAAAGCCAGAAAAGTTGGGGCTGCGAAAGGAACTTTGTTGCAGAAGCCTGCAAGAACAACGATGGAAGCATCGAATACAGTATCGAATCACTGCAGAGTGTCATGTGGGAAGATGATTCATATTTGGTCATTTCGTCAAGAACTGAAGAGAACTGCATAGAAGCCTGCTTGGAAGACTGCAATTGTGAAGCTGCATTATTCAAAAACAGCGAGTGCAGAAAGCAAAAGCTTCCTTCGAGATTTGGAAGAAGATCGCTGAGTGATGAAACAACAGCTTTTGTCAAGGTAGGCACGTCCACCGCAACCCGACGTGCACCCAAAGAAAGCAAAAAAGAGTGGCGAAAGGACATCCTAATCATAAGCTGTTCACTTCTTGCTCTAGCGTGCATTGTCTTAGCGATATCTGGACTTCTTATTTACAGAAATCGTGGCTGCACATTGAAAAAAGTATCTAAGCAAGGGAATTTGCGTTTGACAGAGGGTGCCACATTGCAATCATTTACTTACCAAGAGCTTAAAAAAGTGACCAATGGCTTTACGGAAGTGCTTGGTAAGGGAGGATTTGGTACCGTTTATAAGGGAGCCATGTCAAACGGACAGAGGCTAGTAGCGGTAAAGAAACTCAACGTCTCCACAGGGGAAAAGGAGTTTCGTACTGAGATGAAAGCACTTGCGGGAACACATCACCGGAACCTGGTCCAATTGCTGGGTTATTGCCTTGAAGGTCCAAACAGATTTCTGGTGTATGAATATATAAGCAATGGTTCCCTTGCAAATTTACTATTCACACCAGCTAAATGGCCTCGTTGGGATGAAAGGATGGGAATTGCGCAGAATGTAGCAAGAGGTATCCTCTATCTGCATGAAGAATGTGAGACTCAGATTATGCATTGCGACATAAAACCACAGAACATACTTATGGATGAGTATGGGGGTGCAAAAATTAGTAGCTTTGGATTGGCAAAAAGGCTGAAGCATGGCCAGACCAGCACCCTTGCTGAGATCCGAGGAACAAAGGGTTATATTGCACCGGAGTGGTTCCGAAACCAGCCGGTGACAGTTAAAGTAGACGTGTACAGCTTTGGAATCATGTTGTTGCAGATCATATGTTGCCGAAAGAATTTCGACTTGAGCCTTCCTGACGAAGAAATTGGCCTTAATGAATGGGTTAGTCATTGTTTTGAGGCAGGTGAGCTGGGTAAACTAGTGGATGATGAAGAGGTGGACAAACGAGAACTGGAGAGGATGGTTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCGCTGTTCCGTCCCTCAATAAAGAAGGTTCTTCTGATGTTGGAAGGCAGTATTATAGACATCCCTGTACCTCCCAGTACTTCTACTACTTATTTTAGTGCCGTCTAG 1962 0.4388 MLDSGNFVLYNSKQEIIWQSFDHPTDTLLSGQRLQAGAELVSSVSEKNYSTGMFQLKMQHDGNLVQYPTNVPEVVEYAYWASDTHGEGDNATLNLDADGYLYLLNATGFNIKNLTDGGGPQEETIYLMKIDVDGIFRLYSRGLDQSSEWSVEWSSSIDKCDPKGLCGLNSYCSLMDQEPVCTCLPGFDFVDKSQKSWGCERNFVAEACKNNDGSIEYSIESLQSVMWEDDSYLVISSRTEENCIEACLEDCNCEAALFKNSECRKQKLPSRFGRRSLSDETTAFVKVGTSTATRRAPKESKKEWRKDILIISCSLLALACIVLAISGLLIYRNRGCTLKKVSKQGNLRLTEGATLQSFTYQELKKVTNGFTEVLGKGGFGTVYKGAMSNGQRLVAVKKLNVSTGEKEFRTEMKALAGTHHRNLVQLLGYCLEGPNRFLVYEYISNGSLANLLFTPAKWPRWDERMGIAQNVARGILYLHEECETQIMHCDIKPQNILMDEYGGAKISSFGLAKRLKHGQTSTLAEIRGTKGYIAPEWFRNQPVTVKVDVYSFGIMLLQIICCRKNFDLSLPDEEIGLNEWVSHCFEAGELGKLVDDEEVDKRELERMVKVGLWCIQDEPLFRPSIKKVLLMLEGSIIDIPVPPSTSTTYFSAV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1471 653 ProSiteProfiles Protein kinase domain profile. 368 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1471 653 Gene3D Phosphorylase Kinase; domain 1 341 442 - -
Vvi4g1471 653 FunFam Serine/threonine-protein kinase 24 151 - -
Vvi4g1471 653 Pfam D-mannose binding lectin 1 36 IPR001480 -
Vvi4g1471 653 ProSiteProfiles Bulb-type lectin domain profile. 25 151 IPR001480 -
Vvi4g1471 653 SUPERFAMILY alpha-D-mannose-specific plant lectins 48 108 IPR036426 -
Vvi4g1471 653 Gene3D Transferase(Phosphotransferase) domain 1 443 640 - -
Vvi4g1471 653 SMART serkin_6 368 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1471 653 Pfam Protein kinase domain 372 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1471 653 Pfam S-locus glycoprotein domain 124 188 IPR000858 GO:0048544
Vvi4g1471 653 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 644 - -
Vvi4g1471 653 SUPERFAMILY Protein kinase-like (PK-like) 353 633 IPR011009 -
Vvi4g1471 653 FunFam S-receptor-like serine/threonine-protein kinase 337 442 - -
Vvi4g1471 653 SMART blect_4 25 151 IPR001480 -
Vvi4g1471 653 FunFam Serine/threonine-protein kinase 25 167 - -
Vvi4g1471 653 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 67 IPR036426 -
Vvi4g1471 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vvi4g1471 653 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 443 639 - -
Vvi4g1471 653 ProSitePatterns Protein kinases ATP-binding region signature. 374 398 IPR017441 GO:0005524
Vvi4g1471 653 Gene3D - 23 151 IPR036426 -
Vvi4g1471 653 ProSiteProfiles PAN/Apple domain profile. 208 289 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1471 Vvi-Chr4 21979116 21981077 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1471 353 644 Receptor kinase-like Gene Family AT5G38280 42.715 3.91e-66 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1471 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1471 - - vvi:100253884 1324.69