Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1469 ATGGCTTCAACTACTTTACTGTTTCTTCTTCTCTCTGCATTTTGTGTTGCAGCAGAAGCCCAACAGAGAGGTTCTAATATAAGTCGAGGTTCTTCTCTAACACCCACTTCCAACTCTTTTTGGCTCTCACCCAACCGCCTATATGCCTTTGGATTCTACAAGCAGGGTGATGGCTATTATGTAGGAATTTTTCTTAACGGAATTCCCCAGAAAACTGTAGTGTGGACAGCCAACCGAGATGATCCCCCAGTCCCCAGCAACGTTACCTTGCACTTTACTAGCGAAGGCAGGCTCAGGTTGCAAACGCAAGCTCAGCAAAAGGAGATTGTCAATTCTGCTTCAGCTTCTTCTGCTTCCATGCTGGATTCGGGAAATTTCGTGCTCTATAATTCTGATGGGGACATGGTATGGCAGAGTTTTGATCTCCCAACCGATACCCTTTTACTAGGTCAACGTCTCTCGGCAGGGAAAGAGCTGTTTTCTATTGTGTCGGAAACTAACCCCTCAACTGGAATGTTTCGCCTGAAGATGCAACATGATGGGAACCTTGTGCAATACCCGGTGAAAACTCCAGACACGGAAACATATGCCTATTATGCAACAAATACGGGTGGAGTAGGAGATAATGTGACCCTACATCTTGATGGTGGAGGTCATCTTTACTTGGTCAATACTAATGGTTTCAATATAGTGAATATAACAGATGGAGGTTATGACAATGAAAACCTCTATCTTCTGAGAATCGATCCGGATGGGATCTTCAAACTGTACTCACATGATTTGGGTCAGAACGGCAGCTGGTCAATTTTATGGAGGTCTTCAAACGACAAGTGTGCTCCTAAGGGTCTATGCGGGGTTAATGGGTTTTGTGTTGTGCTTGATGACAGACGTGGCTGTGAATGTCTTCCTGGATTTGATTTTGTTGTTGCAAGCAACTGGAGTTTGGGCTGCATAAGAAATTTCCAAGAAGAAATTTGCAAAAGCAAGGATGGAAGTACCAAATTCACCATGTCAACATTGGAGAACACCTGGTGGGAAGATGCTTCCTACTCCGCTCTATCATTATCAACCCAAGAAGATTGTGAACAAGCCTGCTTGGAGGATTGTAACTGTGAAGCTGCCCTGTTTGAAGATGGAAGTTGCAAAAAGCAACGACTTCCTTTGCGATTTGGGAGAAGATCGCTAAGTGATTCAAACATACTCTTTGTGAAGGTGGGTTCCCCAGAAGTTTCACGACAAGGAAGCAAGAAAGAGCTTCGGACAAACATCCTAGTTATCAGTGTTTCATTAGCATCTTTTACTCTCATTATCTTGGCCATTTCTGGAGTTCTAATTCATAGAAAGAATCTATTGGCATACAAGAAGATCTCAGAGACTGGGAATGTAGGATTGACTGAAGACGTTGCTCTGCGATCATTTACCTACATGGAACTTGAGAAGGTTACCAACTGTTTTAAGGAAGAGATTGGTAAGGGAGCGTCTGGGACTGTTTATAAGGGAGCCATATCAAACGGCCAGAGGATTGTAGCAGTCAAGAAACAAGAGAAGGTGTTGGCTGAATGGCAAAGAGAATTTCAGAATGAATTAAAAGTACTTGGGAGAACACACCACAGGAATCTCGTCAGATTGCTGGGTTACTGCCTTGACGGGAGAAACAGGCTTTTGGTATATGAATACATGAGCAATGGCTCACTTGCAGATTTGCTCTTCACACCTGCAAAACAACCTTGCTGGGTTGAGAGAGTGAGAATTGCACTCAACGTAGCAAAAGGCGTTCTCTATCTTCATGAAGAGTGTGAGACACAGATCATACATTGTGATATTAAACCACAAAACATACTCATGGATGAGTATAGATGTGCAAAAATTTCTGACTTTGGATTAGCAAAGCTGCTGATGCATGACCAGACCAATACCTTTACCGGGATCAGAGGAACAAGGGGCTATGTTGCGCCTGAGTGGCATCGCAAACTGGCAGTGACAGTTAAAGCGGATGTATACAGCTATGGAATTGTGTTGTTGGAGACCATATGCTGTCGGAGGAATGTAGACTGGAGCCTCCCGGAAGAAGAAGCGATTCTTGAAGAGTGGGTCTACCATTGTTTAGAAGCTGGGGAGCTCGGTAAACTAGTGGGCGATGAAGAGGTGGACAAGAGACAATTGGAGAGGATGGTTAAAGTTGGTCTTTGGTGCATCCTGGACGAGCCATCGCTTCGTCCATCAATGAATAAGGTTCTCCTGATATTGGAAGGTACTGTAGACATCCCAGTACCCCCAAGTCCTGGTTCTTTTCTTTCTTCCATCTAG 2307 0.4413 MASTTLLFLLLSAFCVAAEAQQRGSNISRGSSLTPTSNSFWLSPNRLYAFGFYKQGDGYYVGIFLNGIPQKTVVWTANRDDPPVPSNVTLHFTSEGRLRLQTQAQQKEIVNSASASSASMLDSGNFVLYNSDGDMVWQSFDLPTDTLLLGQRLSAGKELFSIVSETNPSTGMFRLKMQHDGNLVQYPVKTPDTETYAYYATNTGGVGDNVTLHLDGGGHLYLVNTNGFNIVNITDGGYDNENLYLLRIDPDGIFKLYSHDLGQNGSWSILWRSSNDKCAPKGLCGVNGFCVVLDDRRGCECLPGFDFVVASNWSLGCIRNFQEEICKSKDGSTKFTMSTLENTWWEDASYSALSLSTQEDCEQACLEDCNCEAALFEDGSCKKQRLPLRFGRRSLSDSNILFVKVGSPEVSRQGSKKELRTNILVISVSLASFTLIILAISGVLIHRKNLLAYKKISETGNVGLTEDVALRSFTYMELEKVTNCFKEEIGKGASGTVYKGAISNGQRIVAVKKQEKVLAEWQREFQNELKVLGRTHHRNLVRLLGYCLDGRNRLLVYEYMSNGSLADLLFTPAKQPCWVERVRIALNVAKGVLYLHEECETQIIHCDIKPQNILMDEYRCAKISDFGLAKLLMHDQTNTFTGIRGTRGYVAPEWHRKLAVTVKADVYSYGIVLLETICCRRNVDWSLPEEEAILEEWVYHCLEAGELGKLVGDEEVDKRQLERMVKVGLWCILDEPSLRPSMNKVLLILEGTVDIPVPPSPGSFLSSI* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1469 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Vvi4g1469 768 ProSiteProfiles Bulb-type lectin domain profile. 18 141 IPR001480 -
Vvi4g1469 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 21 141 - -
Vvi4g1469 768 Gene3D Phosphorylase Kinase; domain 1 465 559 - -
Vvi4g1469 768 Gene3D Transferase(Phosphotransferase) domain 1 560 755 - -
Vvi4g1469 768 FunFam Serine/threonine-protein kinase 144 286 - -
Vvi4g1469 768 Pfam D-mannose binding lectin 72 155 IPR001480 -
Vvi4g1469 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 560 757 - -
Vvi4g1469 768 SMART blect_4 144 277 IPR001480 -
Vvi4g1469 768 SMART blect_4 32 143 IPR001480 -
Vvi4g1469 768 FunFam Serine/threonine-protein kinase 143 269 - -
Vvi4g1469 768 Pfam Protein kinase domain 486 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1469 768 ProSitePatterns Protein kinases ATP-binding region signature. 489 513 IPR017441 GO:0005524
Vvi4g1469 768 SMART serkin_6 483 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1469 768 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 33 760 - -
Vvi4g1469 768 Gene3D - 142 269 IPR036426 -
Vvi4g1469 768 SUPERFAMILY Protein kinase-like (PK-like) 468 749 IPR011009 -
Vvi4g1469 768 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 186 IPR036426 -
Vvi4g1469 768 ProSiteProfiles EGF-like domain profile. 274 311 IPR000742 -
Vvi4g1469 768 PIRSF SRK 1 768 IPR024171 GO:0004674
Vvi4g1469 768 FunFam S-receptor-like serine/threonine-protein kinase 453 559 - -
Vvi4g1469 768 Gene3D - 19 141 IPR036426 -
Vvi4g1469 768 ProSiteProfiles Protein kinase domain profile. 483 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1469 768 ProSiteProfiles PAN/Apple domain profile. 326 407 IPR003609 -
Vvi4g1469 768 Pfam S-locus glycoprotein domain 239 306 IPR000858 GO:0048544
Vvi4g1469 768 SUPERFAMILY alpha-D-mannose-specific plant lectins 169 267 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1469 Vvi-Chr4 21969318 21971624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1469 411 761 Receptor kinase-like Gene Family AT5G38280 40.166 6.88e-66 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1469 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1469 - - vvi:100248793 1550.03