Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1468 ATGGATGAGTATAGGTGTGCAAAAATTTCTGACTTTGGATTAGCAAAGCTGCTGATGCATGACCAGACCAATACATCTACCGGGATCAGAGGAACAAGGGGCTATGTTGCTCCTGAGTGGCATCGCAAACAGCCAGTGTCGGTTAAAGCAGATGTTTACAGCTATGGAATTGTGTTGTTGGAGACCATATGTTGTCGGAGGAATGTAGACTGGAGCCTCCCGGAAGAAGAAGTCATTCTTGAAGAATGGGTCTACCAATGTTTCGAAGCTGGTCAGCTTGGTAAACTAGTGGGCGATGAAGAGGTGGACAGGAGACAATTGGATAGGATGGTTAAAGTTGGTCTTTGGTGCATCCTGGACGAGCCATCGCTTCGTCCATCAATGAAGAAGGTCCTCATGATGTTGGGAGGTACTGTAGACATCCCAGTACCTCCAAGTCCTGGTTCTTTTCTTTCTTCCATCTAG 465 0.4667 MDEYRCAKISDFGLAKLLMHDQTNTSTGIRGTRGYVAPEWHRKQPVSVKADVYSYGIVLLETICCRRNVDWSLPEEEVILEEWVYQCFEAGQLGKLVGDEEVDRRQLDRMVKVGLWCILDEPSLRPSMKKVLMMLGGTVDIPVPPSPGSFLSSI* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1468 154 Gene3D Transferase(Phosphotransferase) domain 1 1 144 - -
Vvi4g1468 154 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 146 - -
Vvi4g1468 154 ProSiteProfiles Protein kinase domain profile. 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1468 154 Pfam Protein kinase domain 7 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1468 154 SUPERFAMILY Protein kinase-like (PK-like) 2 135 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1468 Vvi-Chr4 21958790 21959254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1468 1 147 Receptor kinase-like Gene Family AT5G38280 44.231 5.94e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1468 Pkinase 5.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1468 - - vvi:100265971 306.99