Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1466 ATGGAAGAGATTGGTAAGGGGGCTTCTGGGACTGTTTATAAGGGAGCCACATCAAACGGCCAGAGGATTGTAGCAGTCAAGAAACTAGAGAAGGTGTTGGCTGAAGGGGAAATAGAATTTCAGAATGAATTAAAAGTAATTGGGAGAACACACCACAGGAATCTCGTCAGATTGCTGGGCTACTGCCTTGACGGGCCAAACAGGCTTTTGGTATATGAATACATGAGCAATGGATCACTTGCAGATTGGCTCTTCACACCTGGAAAACAACCTCGCTGGAGTGAGAGAATGGGAATTGCCCTCAATGTAGCAAGAGGCATTCTCTATCTGCATGAAGAGTGCGAAACATGCATCATACATTGTGATATTAAACCACAAAACATACTCATGGATGAGTATAGGTGTGCAAAAATTTCTGACTTTGGATTAGCAAAGCTGCTGATGCATGACCAGACCAATACCTCTACCGGGATCAGAGGAACAAGGGGCTATGTTGCGCCTGAGTGGCATCGCAAACAGCCAGTGTCGGTTAAAGCAGATGTTTACAGCTATGGAATTGTGTTGTTGGAGACCATATGTTGTCGGAGGAATGTAGACTGGAGCCTCCCGGACGAAGAAGTCATTCTTGAAGAATGGGTCTACCAATGTTTCGAAGCTGGTGAGCTTGGTAAACTAGTGGGTGATGAAGAGGTGGACAGGAGACAATTGGATATGATGGTTAAAGTTGGTCTTTGGTGCATCCTGGATGATCCATCGCTTCGTCCATCAATGAAGAAGGTTCTCCTAATGTTGGAAGGTACTGTAGACATCCCAGTACCTCCAAGTCCTGTTTCTTTTCTTTCTTCCATCTAG 852 0.4507 MEEIGKGASGTVYKGATSNGQRIVAVKKLEKVLAEGEIEFQNELKVIGRTHHRNLVRLLGYCLDGPNRLLVYEYMSNGSLADWLFTPGKQPRWSERMGIALNVARGILYLHEECETCIIHCDIKPQNILMDEYRCAKISDFGLAKLLMHDQTNTSTGIRGTRGYVAPEWHRKQPVSVKADVYSYGIVLLETICCRRNVDWSLPDEEVILEEWVYQCFEAGELGKLVGDEEVDRRQLDMMVKVGLWCILDDPSLRPSMKKVLLMLEGTVDIPVPPSPVSFLSSI* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1466 283 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 275 - -
Vvi4g1466 283 Gene3D Phosphorylase Kinase; domain 1 4 75 - -
Vvi4g1466 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Vvi4g1466 283 ProSitePatterns Protein kinases ATP-binding region signature. 4 28 IPR017441 GO:0005524
Vvi4g1466 283 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 75 272 - -
Vvi4g1466 283 SUPERFAMILY Protein kinase-like (PK-like) 2 265 IPR011009 -
Vvi4g1466 283 ProSiteProfiles Protein kinase domain profile. 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1466 283 Gene3D Transferase(Phosphotransferase) domain 1 76 275 - -
Vvi4g1466 283 PIRSF ILK 1 270 - -
Vvi4g1466 283 SMART serkin_6 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1466 283 Pfam Protein kinase domain 2 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1466 Vvi-Chr4 21929181 21930032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1466 4 279 Receptor kinase-like Gene Family AT5G38280 45.105 4.35e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1466 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1466 - - vvi:100265971 557.37