Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1460 ATGTCAACATTGGATAACACCTGGTGGGAAGATGCTTCCTACTCCACTCTATCATTACCAACCCAAGAAGATTGTGAACAAGCCTGCTTGGAGGACTGTAACTGTGAAGCTGCCCTGTTTGAAGATGGAAGTTGCAGAAAGCAACGGCTTCCTTTGCGATTTGGGAGAAGATCGCTAAGTAATTCAAACATACTCTTTGTGAAGGTGGGTTCCACAGAAGTTTCACAACAAGGAACCAAGAAAGAGATCCGGACAGACATCCTAGTTATCAGTGTTTCATTAGCTTCTTTTGCTCTCATTATCTTGGTCATTTCTGGAGTTCTAATTCATAGAAAGAATCTATGGGCATACAAGAAGATCTCAGAGACTGGGAATGTTGGATTGACTGAAGGCGTTGCTCTGCGATCATTTACCTACATGGAACTTGAGAAGGTTACCAACGGTTTTAAGGAAGAGATTGGTAAGGGAGCTTCTGGGACTGTTTATAAGGGAGCCATATCAAACAGCCAGAGGATTGTAGCAGTCAAGAAACTAGAGAAGGTGTTAGCTGAGGGGCAAAGAGAATTTCAGAATGAATTAAAAGTAATTGGGAGAACACACCACAGGAATCTCGTCAGATTGCTGGGTTACTGCCTTGAAGGGCCAAATAGGCTTTTGGTATATGAATACATGAGCAATGGATCACTTGCAGATTTGCTCTTCACACCTGGAAAACAACCTTGCTGGATTGAGAGAATGGGAATTGCCCTGAACGTGGCAAGAGGCGTTCTCTATCTGCATGAAGAGTGTGAGACACAGATCATACATTGTGATATTAAACCACAAAACATACTCATGGATGAGTATAAACGTGCAAAAATTTCGGACTTCGGATTAGCAAAACTGCTGATGCATGACCAGACCAATACCTTTACCGGGATCAGAGGAACAAGGGGCTATGTTGCCCCTGAGTGGCATCGCAAACTGCCAGTAACAGTTAAAGCAGATGTTTACAGCTATGGAATTGTGTTGTTGGAGACCATATGTTGTAGAAAGAATGTAGACTGGAGCCTCCCGGAAGAAGAAGCCATTCTAGAAGAATGGGTCTACCATTGTTTCGAAGCTGGTGAGCTTGGTAAACTAGTGGGCGATGAAGAGGTGGACAAGAGACAGTTGGAGAGGATGGTTAAAGTTGGTCTTTGGTGCATCCTGGACGAGCCATCGCTTCGTCCATCAATGAAGAAGGTTCTCCTGATGTTGGAAGGCACTGTAGACATCCCAGTACCTCCAAGTCCTGTTTCTTTTCTTTCTGCCATCTAG 1299 0.4396 MSTLDNTWWEDASYSTLSLPTQEDCEQACLEDCNCEAALFEDGSCRKQRLPLRFGRRSLSNSNILFVKVGSTEVSQQGTKKEIRTDILVISVSLASFALIILVISGVLIHRKNLWAYKKISETGNVGLTEGVALRSFTYMELEKVTNGFKEEIGKGASGTVYKGAISNSQRIVAVKKLEKVLAEGQREFQNELKVIGRTHHRNLVRLLGYCLEGPNRLLVYEYMSNGSLADLLFTPGKQPCWIERMGIALNVARGVLYLHEECETQIIHCDIKPQNILMDEYKRAKISDFGLAKLLMHDQTNTFTGIRGTRGYVAPEWHRKLPVTVKADVYSYGIVLLETICCRKNVDWSLPEEEAILEEWVYHCFEAGELGKLVGDEEVDKRQLERMVKVGLWCILDEPSLRPSMKKVLLMLEGTVDIPVPPSPVSFLSAI* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1460 432 SUPERFAMILY Protein kinase-like (PK-like) 132 414 IPR011009 -
Vvi4g1460 432 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 424 - -
Vvi4g1460 432 ProSiteProfiles Protein kinase domain profile. 147 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1460 432 SMART serkin_6 147 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1460 432 FunFam S-receptor-like serine/threonine-protein kinase 116 223 - -
Vvi4g1460 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vvi4g1460 432 Gene3D Transferase(Phosphotransferase) domain 1 224 419 - -
Vvi4g1460 432 Pfam Protein kinase domain 150 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1460 432 Gene3D Phosphorylase Kinase; domain 1 133 223 - -
Vvi4g1460 432 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 224 421 - -
Vvi4g1460 432 ProSitePatterns Protein kinases ATP-binding region signature. 153 177 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1460 Vvi-Chr4 21863920 21865218 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1460 75 428 Receptor kinase-like Gene Family AT5G38280 40.110 4.87e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1460 Pkinase 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1460 - - vvi:100267699 872.078