Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1458 ATGGAGGAGTCCGTACTTAACAGTGCATGTGATGTGAAAAGTTTTTGTGGTTTCAACAGCTTTTGCACATTTGCTGACGATAAACCCTACTGTGATTGTCTTCCTGGTTCTGATTTCATTGATCCTAATCGAAGATCTCTTGGCTGTGGGAGAAACTTCTCTGAAGAAGGGTGTAGAGATGGGGAAGAAAAAGCGCCTTTTTATGGCATCAAGACAATGGAGAATTTGAATTGGGGAGACCATGCCTATTTTGATGCACCAATGTCAAAAGATGACTGCAGCAACTCTTGTTTGGAAGACTGTGATTGTGGGGCTGCCCTATATCTTAATGGGCTTTGCAAGAAACAAAATTTTCCCTTGAGATATGTTGTAAGAGATCGAAAAGTGTCTTCCACGGCTTTCCTGAAGGTGGGCATGAGAAGTATTGAGACAAAGAACGGGACCTTTCCTAGCCCAAAAAAGCCACCAGTTATAGTGACAAGCAAGAAAGCAGTAGTGCTAATTATTGTTTTAAGCTTGAGTTTCGTTACATGTTCATTTGTTGCTCTTTCATTCTCTGGCTTTTTCATTTTCAAGTACCGGGTTCTTAGGTACAGAAGGCTGTTGGAGACGGGAAATTTGGGCCCAGCCAAGGAGCTCACCTTGCAATTGTTTTCATACAAAGAGCTCATAAGAGCAACCAGTGGGTTCAAAGAAGAGTTGGGTAAGGGCTCTTTCGGAGCAGTCTATAAAGGGTTTTTGTACAAAAGTAAAAAACTAGTTGCAGTAAAGAGACTAGAGAAGATAGTAGAAGAAGGTGAAAGGGAGTTTCAGGCAGAGATGCGAGCAATTGGGAGAACTCACCACAGGAACTTGGTTCGGTTGATGGGGTACTGTGCTGAAAACTCTAGGAGGCTTCTGGTCTATGAATATATGAGTAATGGCTCCCTTGCAAATCTCCTTTTCAATGCGGGAACCCGCCCTCACTGGAATGAAAGAGTTAGAATTGCATTGGATGTGGCAAGAGGTATCCTCTATTTACATGAAGAATGTGAAACCCCTATCATTCATTGTGATATAAAGCCTCAAAATATTCTGATGGATGAATTTTTGAATGCCAAAATCTCTGATTTTGGATTAGCCAAGTTGTTGATGCCTGATCAAACAAGGACTTTCACTGGGGTCAGAGGGACAAGAGGATACTTGGCACCAGAATGGCAGAGGAACACTCCAATATCTGTAAAAGCTGACATCTACAGCTATGGGATAGTGCTGTTAGAAATTGTATGTTGCAGAAAGAACATGGAAGTTCAGGTGAAAAATCCAGAAGAGATTATTCTGTCCAATTGGGTCTATCAGTGCATGGTTTCCAGAGAGTTGGATAAGCTTGTGGCTGATGAAGTAGCAGACAAAAAAACCTTGGAAAGAATGGTTAAGGTGGGATTGTGGTGCATTCAAGATGAACCTGCTCTTCGTCCTTCCATGAAGAGTGTAGTGCTGATCTTAGAAGGAATAACTGATATAGTCGTCCCTCCATGTCCAACTACTACCACCATGTAG 1539 0.4211 MEESVLNSACDVKSFCGFNSFCTFADDKPYCDCLPGSDFIDPNRRSLGCGRNFSEEGCRDGEEKAPFYGIKTMENLNWGDHAYFDAPMSKDDCSNSCLEDCDCGAALYLNGLCKKQNFPLRYVVRDRKVSSTAFLKVGMRSIETKNGTFPSPKKPPVIVTSKKAVVLIIVLSLSFVTCSFVALSFSGFFIFKYRVLRYRRLLETGNLGPAKELTLQLFSYKELIRATSGFKEELGKGSFGAVYKGFLYKSKKLVAVKRLEKIVEEGEREFQAEMRAIGRTHHRNLVRLMGYCAENSRRLLVYEYMSNGSLANLLFNAGTRPHWNERVRIALDVARGILYLHEECETPIIHCDIKPQNILMDEFLNAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQRNTPISVKADIYSYGIVLLEIVCCRKNMEVQVKNPEEIILSNWVYQCMVSRELDKLVADEVADKKTLERMVKVGLWCIQDEPALRPSMKSVVLILEGITDIVVPPCPTTTTM* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1458 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Vvi4g1458 512 Coils Coil 256 276 - -
Vvi4g1458 512 ProSitePatterns Protein kinases ATP-binding region signature. 234 257 IPR017441 GO:0005524
Vvi4g1458 512 CDD STKc_IRAK 234 498 - -
Vvi4g1458 512 ProSiteProfiles Protein kinase domain profile. 228 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1458 512 Gene3D Phosphorylase Kinase; domain 1 203 304 - -
Vvi4g1458 512 SUPERFAMILY Protein kinase-like (PK-like) 213 496 IPR011009 -
Vvi4g1458 512 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 305 503 - -
Vvi4g1458 512 SMART serkin_6 228 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1458 512 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 507 - -
Vvi4g1458 512 FunFam S-receptor-like serine/threonine-protein kinase 203 304 - -
Vvi4g1458 512 Pfam Protein kinase domain 231 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1458 512 Gene3D Transferase(Phosphotransferase) domain 1 305 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1458 Vvi-Chr4 21847464 21849002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1458 142 504 Receptor kinase-like Gene Family AT2G43700 37.736 2.44e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1458 Pkinase 4.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1458 - - vvi:100262539 1028.85