Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1457 ATGGCTTCTGTATGGTTTGTGTTCTTTCTGCCATTACTTTGTGTAGGAGTTAGAGCTCAACCAGAGAAGGCCAAGTTAATAAGCTTGAATTCTTCACTTTCCCCTAAATATGGCTCCCCTATGGGATGGGCTTCACCATCCGGCCTTTTTGCATTTGGTTTCTATCCACAAGGCAGTGGGTTTTCAGTGGGAATATGGCTGGTCGGTACAGACGAAAACACAGTTGTTTGGACTGCTAATCGAGATGATCCACCTGCCTCTGCAAACGCTAAGCTATACTTCACAGAAGATGGAAAGCTTCTCCTACAGACCGAGGAAGGTAGTGAAATATCCATTACTGATGGGTCAGGTCCTGCAGTCGCTGCTTCTATGCTTGATTCTGGTAGTTTTGTGCTCTACGACCAGAATTTGAGTGTCATCTGGAACAGCTTCAGTTACCCGACTGACACCTTATTAGGAGGTCAGAACTTGGACTCTAACAAGAAAATGGTTTCCAGTGAATCGAGATCCAACCACTCGAGTGGGTGGTTTTTCCTCGCTATGCAGGGAGATGGAAACCTTGTTTCGTACCCAGTAAATAGTTCAGGGGAAAGCGATGACTCCTACTGGAGCTCTGGGACTAGTTCTGCAAGTAGGCTGAATTTTTATTCAACTCAGCTGAGTCTCAACACTGAAGGCGCTCTATACTTGAGCAGTGGGATGTCATCATTGATCATACAAACTTTCAGGAACAGCTCCAATCCCAGCAAGAACAAGACCACCATATACCGTGCAACATTTGATCCTGATGGGATTTTTAGGTTATACTCGCATCGTTTTGAGAACAATGGTAGCTCCAATGAGTCCATTGTGTGGTCAAGTTTGAGTGATCAATGTGATGTCAAAGGTTTCTGCGGCTTCAACAGTTATTGCTCAAACCCTGGTGCTAAAGCTGAATGCCATTGTTTACCAGGTTTTGCTTTCAACAACCCTAGTGAGAAGATCCGAGGCTGCTCTAGGATCTTCAATGGTGATGATTGCAGCAAAATGAACAATCAATTGATATCATACAACATTACTACTTTAGAAAATACAGGGTGGGGAGACTATCCTTATTACAAGAAATCAATGAAGATGGAAGAATGCAGCAAGTTTTGCCTGGATGATTGCAACTGCGGGGCAGCACTGTATCGGAATGGAAGTTGCTATAAATATAAGCTTCCGGTCAGATATGGTAGGATAAATCGGAACGAGACTGCTACAGCCTTGTTGAAGGGACATTTGCAGAGGGTCAAGTCTGCATACCGTCCCCCACCTGCTCCAATGAATACAGAAGTGAAGATTGATGGCAAGAAAACTCTCATTTTAGTTCTTTCTTTAAGTTTGGGTTCCATTGCATTCTTGTGTTTGGTCATTGCAATCTCCAGTTTCTGGGTATATAGACATCAAGTTTGGAGCTACAGACAACTGTCGGAAGAAGTAAATTTGGGTTCAACGGAAGAGTTTACTCTGCAATCTTTTTCTTATGATGAGCTTGAGAAGGCAACGGATGGCTTCCGGGAAGAGTTGGGGAGGGGCTGTTATGGAGCTGTTTACAAAGGGACAATAGAAAGGGATAACAAAGTTGTGGCTGTAAAAAGACTAGAGAAAGTTGTGGAACAAGGAGAGAAGGAGTTCCAAGCTGAAATGACTGCGATTGGGCAAACTCATCACAGGAATTTAGTCCGTCTGCTTGGTTTTTGCATTGAGGGCTCAAAGAAGCTTCTTGTTTATGAGTTCATGAGAAATGGCTCACTTGCAGATCTTCTCTTCAATGCTGAGAAGCGCTCCATTTGGAAAGTAAGAGTGAGAATTGCACTAGAGTTAGCCCGAGGGATACTCTATCTGCACGAGGAGTGCGAGTCCCAAATCGTCCACTGTGACATAAAGCCTCAAAACATACTCATGGATGATGCCTGGACTGCTAAGATATCCGATTTTGGATTTTCAAAGCTGCTAATGCCAAATCAAGAAGGCATTGTTACTGGGATCAGAGGGACAGCAGGGTACTCTGCACCCGAATGGCACAAAAATACCCTAATATCAGTGAAGGCTGACATTTACAGTTTTGGGGTTGTGCTTTTGGAGATTGTCTGTTGCAGGAGAAGTATAGAGGTTAAAGTTTCAACTGCAGATGAGATCATTCTTTCTAGTTGGGTGTATGGTTGTCTTGTGGCCAGAGAGTTGGATAAGCTTGTTGGAGATGAACAAGTAGAATTTAAGTCGCTAGAAAGAATGGTGAAGGTGGGCTTGTGGTGTGTTCAAGATGACCCGGCTTTGCGTCCTTCCATGAAGAATGTGATATTGATGTTAGAAGGGACTGTGGATATACCATTCCCTCCATCTCCAACTCCTCTGTAA 2379 0.438 MASVWFVFFLPLLCVGVRAQPEKAKLISLNSSLSPKYGSPMGWASPSGLFAFGFYPQGSGFSVGIWLVGTDENTVVWTANRDDPPASANAKLYFTEDGKLLLQTEEGSEISITDGSGPAVAASMLDSGSFVLYDQNLSVIWNSFSYPTDTLLGGQNLDSNKKMVSSESRSNHSSGWFFLAMQGDGNLVSYPVNSSGESDDSYWSSGTSSASRLNFYSTQLSLNTEGALYLSSGMSSLIIQTFRNSSNPSKNKTTIYRATFDPDGIFRLYSHRFENNGSSNESIVWSSLSDQCDVKGFCGFNSYCSNPGAKAECHCLPGFAFNNPSEKIRGCSRIFNGDDCSKMNNQLISYNITTLENTGWGDYPYYKKSMKMEECSKFCLDDCNCGAALYRNGSCYKYKLPVRYGRINRNETATALLKGHLQRVKSAYRPPPAPMNTEVKIDGKKTLILVLSLSLGSIAFLCLVIAISSFWVYRHQVWSYRQLSEEVNLGSTEEFTLQSFSYDELEKATDGFREELGRGCYGAVYKGTIERDNKVVAVKRLEKVVEQGEKEFQAEMTAIGQTHHRNLVRLLGFCIEGSKKLLVYEFMRNGSLADLLFNAEKRSIWKVRVRIALELARGILYLHEECESQIVHCDIKPQNILMDDAWTAKISDFGFSKLLMPNQEGIVTGIRGTAGYSAPEWHKNTLISVKADIYSFGVVLLEIVCCRRSIEVKVSTADEIILSSWVYGCLVARELDKLVGDEQVEFKSLERMVKVGLWCVQDDPALRPSMKNVILMLEGTVDIPFPPSPTPL* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1457 792 ProSiteProfiles Protein kinase domain profile. 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1457 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 207 IPR036426 -
Vvi4g1457 792 Gene3D - 27 146 IPR036426 -
Vvi4g1457 792 FunFam S-receptor-like serine/threonine-protein kinase 480 586 - -
Vvi4g1457 792 SUPERFAMILY Protein kinase-like (PK-like) 493 778 IPR011009 -
Vvi4g1457 792 ProSiteProfiles Bulb-type lectin domain profile. 30 145 IPR001480 -
Vvi4g1457 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 171 269 IPR036426 -
Vvi4g1457 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 785 - -
Vvi4g1457 792 Gene3D Transferase(Phosphotransferase) domain 1 587 783 - -
Vvi4g1457 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Vvi4g1457 792 CDD STKc_IRAK 516 779 - -
Vvi4g1457 792 FunFam Serine/threonine-protein kinase 148 295 - -
Vvi4g1457 792 SMART serkin_6 510 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1457 792 ProSiteProfiles Bulb-type lectin domain profile. 148 281 IPR001480 -
Vvi4g1457 792 Pfam Protein kinase domain 514 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1457 792 Pfam S-locus glycoprotein domain 250 320 IPR000858 GO:0048544
Vvi4g1457 792 SMART blect_4 34 147 IPR001480 -
Vvi4g1457 792 PIRSF SRK 1 792 IPR024171 GO:0004674
Vvi4g1457 792 FunFam Serine/threonine-protein kinase 147 282 - -
Vvi4g1457 792 Pfam D-mannose binding lectin 74 164 IPR001480 -
Vvi4g1457 792 ProSitePatterns Protein kinases ATP-binding region signature. 516 539 IPR017441 GO:0005524
Vvi4g1457 792 Gene3D Phosphorylase Kinase; domain 1 474 586 - -
Vvi4g1457 792 Gene3D - 147 283 IPR036426 -
Vvi4g1457 792 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 39 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1457 Vvi-Chr4 21843592 21845970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1457 454 779 Receptor kinase-like Gene Family AT5G16000 39.528 1.59e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1457 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1457 - - vvi:100257411 1590.86