Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1453 ATGGCTTGTGTCTATGTTGTTTTCTTACTCTTCTTTGTATCCTTTGAAGCTGTAGGAGCACAAGAAGAGCCCCCAGCTGGCTTCATAACCTTGGAATCAGCTACACTCTCCCCTACAATTCAACCCACTTCATGGACGTCACCTTCTGGCATATTTGCATTTGGGTTCTACCCTCAAGGAAGTGATTTTTTATTGGGAATTTGGTTAATGGATGAAGAAAAAACTCTTGTATGGACTGCACATCGAGATGACCCGCCGGTGCCCTTGGATGCTAAACTCTTGACCATTAACGGCAAGCTCCTTCTGAGAACAGGGCAAAGTGAGGAAAAAGTCATTGTGGAGTCGGCTTCATTTGCTTTCATGAGAGACTCAGGAAATTTTATGGTCTACAACCAAAGTTTCCATGTCATCTGGGAAAGTTTTAAATTTCCTACTGATACCATATTGGGAGGCCAGAATCTGACGACCGGGGATCAATTGTTTTCTAGTTTATCTGAAACTAATCATTCCACTGGACGGTTTCGTCTCCAGATGCAGACTGATGGGAATCTTGTTTCATACTTTGTAGATGCTTTACCCATGGTACTGGATGCTTATTGGGCTTCTGGTACCAGGGACGGCGACGTCTCCATGAATCAGATGTATCTTAATGATGCTACTGGCCAGCTAGTCATCAGAAACAGCACCAATTTGGTAACACGAGCAGTCTTATACACCAGTTCGCGTTCTGCCAAGAACACAATCTACAGTGCAAGGCTTAGCTATGATGGGATGTTCCGAATGTATTCTCACAGTTTTGACAGTAACAGTAATGGCGATAAGAGCGTTCTCTGGTCAGCAGTGGCCGAGGACGAGAAGTGTCAAGTAAAAGGTTTCTGTGGTTTGAACAGCTACTGCACCCGGAATAACAGTGAACCCTACTGTGTTTGTCTTCCTGGTACTGACTTTGTTGATTCCAACCAGAAGCTACTTGGCTGCCTGAAGAATTTTACTGAATACAGCTGTAACAATATCTCTTATTCTGCCTCTTATCACATTGTTCGTGCAGAGCAGAATCTGCAATGGGATGACCTTCCTTATTTTAAAGGAACGATGAGTATGGAAGAATGCATAAACGGCTGTTTAGAGGACTGTAATTGCGAGGTGGCGCTGTATGATAAGGATGGCTATTGCTCAAAACGAGCACTTCCACTGAAATATGCCAGAAGTGATGAAAATGTGCTGTCCGCAGCTTTCTTCAAGGTAAGCAAAAAAAGTATTGAAATCAAGAATGATACAAGCTTCATTCCAGACCATACAACAGAGGTCACGACCACAAGCACTAAAGACTTGGTGCTAATTCTTGTTATCACTGTTGGCTTCATTACATGTTCATTTGTTTCCCTTGCAATATCTGGTTTTTTCATTTTCAAGTTTCGAGTTGCGAAGTACAGAAGGCTTCTGGAAGATGGAAAACGGGGCCTTATGGAGGAGCTCAAAATGCAATCTTTTTCTTACAAGGAGCTACAGAAAGCAAGCAGAAACTTCAAAGAAGAACTAGGTAAGGGCGCTTTTGGGACTGTTTACTTGGGAGTTCTGCACAAAGGTAAGAAACTTGTTGCAATAAAGAGACTGGAGAAGATGGTGGAAGAAGGGGAAAGGGAGTTTCGGGCAGAGATGAGAGCAATTGGGAGAACTCATCACAAGAACTTGGTTCGCTTGCTCGGCTACTGCACTGAGGGCTCAAAGAGGCTTCTTGTTTATGAATATATGAGTAACCGTTCTCTTGCAGATATTCTCTTCAAGAGCAAAACACGCCCACCTTGGGATGAAAGGGTTAGAATTGCACTGGATGTGGCCAGAGGGATCTTGTATCTACATGAGGAATGCGAGGCACCTATTATTCATTGTGATATAAAGCCTCAAAACATTTTGATGGATGATTTCTGGACTGCTAAGATCTCTGACTTCGGGCTGGCAAAGTTGCTAATGCCAGATCAAACGAGGACCTTTACAGGGGTTAGAGGCACTAGAGGGTACTTGGCACCAGAATGGCAGCAGAATATCCCAATATCAGTGAAGGCCGATGTTTATAGTTATGGTATAGTACTCTTGGAACTTGTGTGTTGCAGAAGGAACTTGGAGGTGAATGTGTCAAAGCCAGAAGAGATTGTTCTTTCTAATTGGGCCTACAAGTGCTTTGTGGCTGGAGAGCTGTACAAACTTTTGGGTGGTGAAGAAGTAGAGAGGAAGAGCTTGGAGGAAATGGTTAAGTTGGGACTTTGGTGCATTCAAGATGAGCCAGCTCTTCGTCCTTCTATCAAGAGTATTGTGCTGATGTTGGAAGGAATTACTGAAATTGCTGTTCCTCCATGCCCAACCACTACCTCCACCTAA 2376 0.4356 MACVYVVFLLFFVSFEAVGAQEEPPAGFITLESATLSPTIQPTSWTSPSGIFAFGFYPQGSDFLLGIWLMDEEKTLVWTAHRDDPPVPLDAKLLTINGKLLLRTGQSEEKVIVESASFAFMRDSGNFMVYNQSFHVIWESFKFPTDTILGGQNLTTGDQLFSSLSETNHSTGRFRLQMQTDGNLVSYFVDALPMVLDAYWASGTRDGDVSMNQMYLNDATGQLVIRNSTNLVTRAVLYTSSRSAKNTIYSARLSYDGMFRMYSHSFDSNSNGDKSVLWSAVAEDEKCQVKGFCGLNSYCTRNNSEPYCVCLPGTDFVDSNQKLLGCLKNFTEYSCNNISYSASYHIVRAEQNLQWDDLPYFKGTMSMEECINGCLEDCNCEVALYDKDGYCSKRALPLKYARSDENVLSAAFFKVSKKSIEIKNDTSFIPDHTTEVTTTSTKDLVLILVITVGFITCSFVSLAISGFFIFKFRVAKYRRLLEDGKRGLMEELKMQSFSYKELQKASRNFKEELGKGAFGTVYLGVLHKGKKLVAIKRLEKMVEEGEREFRAEMRAIGRTHHKNLVRLLGYCTEGSKRLLVYEYMSNRSLADILFKSKTRPPWDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVCCRRNLEVNVSKPEEIVLSNWAYKCFVAGELYKLLGGEEVERKSLEEMVKLGLWCIQDEPALRPSIKSIVLMLEGITEIAVPPCPTTTST* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1453 791 SMART blect_4 36 144 IPR001480 -
Vvi4g1453 791 SMART blect_4 145 272 IPR001480 -
Vvi4g1453 791 CDD STKc_IRAK 513 777 - -
Vvi4g1453 791 Pfam Protein kinase domain 509 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1453 791 FunFam S-receptor-like serine/threonine-protein kinase 477 583 - -
Vvi4g1453 791 ProSitePatterns Protein kinases ATP-binding region signature. 513 536 IPR017441 GO:0005524
Vvi4g1453 791 Gene3D Phosphorylase Kinase; domain 1 482 583 - -
Vvi4g1453 791 Gene3D - 145 272 IPR036426 -
Vvi4g1453 791 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 782 - -
Vvi4g1453 791 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 786 - -
Vvi4g1453 791 Pfam D-mannose binding lectin 75 155 IPR001480 -
Vvi4g1453 791 Gene3D Transferase(Phosphotransferase) domain 1 584 782 - -
Vvi4g1453 791 Gene3D - 36 144 IPR036426 -
Vvi4g1453 791 ProSiteProfiles Protein kinase domain profile. 507 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1453 791 FunFam Serine/threonine-protein kinase 144 275 - -
Vvi4g1453 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Vvi4g1453 791 ProSiteProfiles Bulb-type lectin domain profile. 145 274 IPR001480 -
Vvi4g1453 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 169 264 IPR036426 -
Vvi4g1453 791 PIRSF SRK 1 791 IPR024171 GO:0004674
Vvi4g1453 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 206 IPR036426 -
Vvi4g1453 791 SUPERFAMILY Protein kinase-like (PK-like) 492 775 IPR011009 -
Vvi4g1453 791 Coils Coil 535 555 - -
Vvi4g1453 791 SMART serkin_6 507 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1453 Vvi-Chr4 21645249 21647624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1453 483 774 Glycoside Hydrolase AT3G07070 40.066 3.90e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1453 Pkinase 8.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1453 - - vvi:100267807 1585.85