Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1451 ATGGCTCCCATATCAATTATGTTCCTTTTATTCTTTCTCAATTCTATGGGTGTTAGAGCTCAAACAGCGAAACCCAAGCTCATAGAGTTGGGTTCTTCACTTTCTCCAACGAATGGATCCAGTTCATGGGTCTCACCCTCCGGTCATTTTGCATTTGGTTTCTACCCACAAGATACTGGATTCGCAGTAGGCGTATGGCTGGTCGGTCAATCTGGAAAGACCGTTGTCTGGACTGCTAACCGAGATGATCCGCCGGTGTCCTCCAACACTGCTCTTGAATTCACCAGAAATGGTAAGCTGCTTCTTCGAACTGGGCCGGGTGAAGAAGTATCCATTGCAGATGTGGCAGAATCCTCAGCCTCAGCTTCTATGCTCGATTCTGGTAATTTTGTTCTCTTCGGTGATAATTCTTCTTTTATCATCTGGCAAAGCTTCCAACACCCAACTGATACCCTTCTGGGAGGCCAGAATTTGTCCAATATACTGTCTTCCAGTAAAACGGAATCTTCTGCTATAGGAGCAACCTTAGATGTTGATGGGGTTTTCAGGTTGTATTCCCACAGCTTTGGGAACAGTAATATCTCCAGTGTCTCCATTATGTGGTCGGCATTCAAAAATCCATGTGATGTGAAAGGTCTCTGCGGTGTTAATGGCTTATGTTCAAGCAATGGCACCAATGCCAACTGTTCTTGCGTTCCAGGGTTCGTATCCATTAACCGGGAGAAGTATTCGGGGTGCTACAGGAGCTTCAATAATGAAGAAGGATGCAGGGGACAAGAGCCAGAATCGCTCTACAACATTACTACCTTAAGAAATGTGAGTTGGGAAGGCGCCAATCCTTATTCTGCCCTAACATCACTAAATGAGCAGGGTTGCAGCAGGTCTTGTCTACAAGATTGCAATTGTTGGGCGGCTTATTATTTCAATGGCACTTGCAGAAGATATAAGCTTCCTCTGGTACATGGGATTGCGAATCAAAATGAATCAGGCATCACCTTCCTCAAGATGAGTTTGGGAACTGCCTATGTTGGAGACGATATTCCTGCTCCAAGGAATCAAACAAAGGTGATTGAAAGCAATAAGAAAGAACTTATTTTAATCCTTGCTTCAAGTTTGGGTTCCATTGCTTTCTTATGTGCTCTAGTTGCAGTGTCTAGCTTCTTTATATACAGAAGCCAAGTTCATCGGTACAGAACGCTGTCAGAAAATGCAATGGAAGAGTTTACTCTGCGATCGTTTTCTTATAATGATCTGGAGAAAGCTACAGATGGGTTCAGGGAAGAGTTGGGTAGGGGTCCTTTTGGAGCAGTGTATAAAGGGACTATAGCTCAAGGCAACCAGACTATTGCTGTGAAGAGACTAGAAAAAGTTGTGGAAGAAGGAGAAAGGGAGTTCCAAGCAGAAATGACCATAATTGGGCGAACCCATCACAGGAACTTGGTCCGGTTGCTGGGTTTTTGTATGCAGGGCTCTAAGAAGCTTCTTGTTTATGAATACATGAGCAATGGCTCACTTGCAGATCTTCTCTTCAATGGTGAAAAGCGCCCGATTTGGAGAGAAAGAGTCAGAATTGCCCTAGATGTAGCAAGAGGGATCTTCTACCTCCATGAAGAGTGTGAGGTCCACATCATCCATGGCGACATAAAGCCTAAGAACATACTATTGGACGATTCTTGGACTGCCAAGCTTTCAGATTTCAGGCTAGCGAGGCTTCTGAGGCCTAATCAAACTGGAACCATTTCTCGTTTCGGAGGGAGTAGTAGAGGCTATTCGGCACCCGAGCGGCAGAAGAGGATGTTGATATCAGTGGAAGCAGATGTTTACAGTTTCGGAGTAGTGCTATTGGAGATTGTGTGTTGCAGAAGTAATTTGGATATCAATGTTTCGACAGGAGACGAGATACTTCTTTGCAGTTGGGTGTACAGTTGCTTTGTGGCAAGAGAGTTGGAGAAGCTTGTGGAAGGTGCAGAAGTGAACATGAAAACCCTGGAAAGGATGGTGAAGGTTGGATTATTGTGCATTCAAGATGATCCAAGTCTGCGCCCTACAATGAAGAATGTGATCCTGATGTTGGAAGGGACCGTGGATGTGCCTGTACCTCCATCTCCTACTCCTCTAGGTTCCTGA 2127 0.449 MAPISIMFLLFFLNSMGVRAQTAKPKLIELGSSLSPTNGSSSWVSPSGHFAFGFYPQDTGFAVGVWLVGQSGKTVVWTANRDDPPVSSNTALEFTRNGKLLLRTGPGEEVSIADVAESSASASMLDSGNFVLFGDNSSFIIWQSFQHPTDTLLGGQNLSNILSSSKTESSAIGATLDVDGVFRLYSHSFGNSNISSVSIMWSAFKNPCDVKGLCGVNGLCSSNGTNANCSCVPGFVSINREKYSGCYRSFNNEEGCRGQEPESLYNITTLRNVSWEGANPYSALTSLNEQGCSRSCLQDCNCWAAYYFNGTCRRYKLPLVHGIANQNESGITFLKMSLGTAYVGDDIPAPRNQTKVIESNKKELILILASSLGSIAFLCALVAVSSFFIYRSQVHRYRTLSENAMEEFTLRSFSYNDLEKATDGFREELGRGPFGAVYKGTIAQGNQTIAVKRLEKVVEEGEREFQAEMTIIGRTHHRNLVRLLGFCMQGSKKLLVYEYMSNGSLADLLFNGEKRPIWRERVRIALDVARGIFYLHEECEVHIIHGDIKPKNILLDDSWTAKLSDFRLARLLRPNQTGTISRFGGSSRGYSAPERQKRMLISVEADVYSFGVVLLEIVCCRSNLDINVSTGDEILLCSWVYSCFVARELEKLVEGAEVNMKTLERMVKVGLLCIQDDPSLRPTMKNVILMLEGTVDVPVPPSPTPLGS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1451 708 ProSiteProfiles Bulb-type lectin domain profile. 28 145 IPR001480 -
Vvi4g1451 708 Gene3D Phosphorylase Kinase; domain 1 386 499 - -
Vvi4g1451 708 FunFam S-receptor-like serine/threonine-protein kinase 392 499 - -
Vvi4g1451 708 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 172 702 - -
Vvi4g1451 708 Pfam S-locus glycoprotein domain 175 237 IPR000858 GO:0048544
Vvi4g1451 708 Pfam Protein tyrosine and serine/threonine kinase 425 689 IPR001245 GO:0004672|GO:0006468
Vvi4g1451 708 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 158 IPR036426 -
Vvi4g1451 708 SMART blect_4 34 148 IPR001480 -
Vvi4g1451 708 Gene3D Transferase(Phosphotransferase) domain 1 500 701 - -
Vvi4g1451 708 Gene3D - 27 146 IPR036426 -
Vvi4g1451 708 PIRSF SRK 1 188 IPR024171 GO:0004674
Vvi4g1451 708 PIRSF SRK 161 708 IPR024171 GO:0004674
Vvi4g1451 708 CDD STKc_IRAK 429 693 - -
Vvi4g1451 708 SUPERFAMILY Protein kinase-like (PK-like) 401 692 IPR011009 -
Vvi4g1451 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Vvi4g1451 708 ProSiteProfiles Protein kinase domain profile. 423 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1451 708 Coils Coil 646 666 - -
Vvi4g1451 708 SMART serkin_6 423 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1451 708 FunFam Putative receptor-like protein kinase 500 699 - -
Vvi4g1451 708 Pfam D-mannose binding lectin 74 159 IPR001480 -
Vvi4g1451 708 FunFam Serine/threonine-protein kinase 29 146 - -
Vvi4g1451 708 ProSiteProfiles PAN/Apple domain profile. 256 338 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1451 Vvi-Chr4 21608348 21610681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1451 365 698 Receptor kinase-like Gene Family AT5G59270 38.235 4.58e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1451 PK_Tyr_Ser-Thr 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1451 - - vri:117913343 1249.57