Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1450 ATGCAATCCTTTTCTTACAAGGAGCTACAGAAGGCAAGCAGAAACTTCAAAGAAGAACTGGGTAAGGGCGCTTTTGGGACTGTTTATTTGGGAGTTCTGCAGCAAGGTAAGAAACTCGTTGCAATAAAGAGACTAGAGAAGATGGTGGAAGAAGGGGAAAGGGAGTTTCGGGCAGAGATGAGAGCAATTGGGAGAACTCATCACAAGAACTTGGTTCGCTTGCTCGGCTACTGCACTGAGGGCTCAAGGAGGCTTCTTGTGTATGAATATATGAGTAACCGTTCTCTTGCAGATATTCTCTTCAAGAGCAAAACACGCCCACCTTGGGATGAAAGGGTTAGGATTGCACTGGATGTTGCGAGAGGGATCTTGTATCTACATGAGGAATGCGAGGCACCTATTATTCATTGTGATATAAAGCCTCAAAACATTTTGATGGATGATTTCTGGACTGCTAAGATCTCTGACTTCGGGCTGGCAAAGTTGCTAATGCCAGATCAAACGAGGACCTTTACAGGGGTTAGAGGCACTAGAGGGTACTTGGCACCAGAATGGCAGCAGAATATCCCAATATCAGTGAAGGCCGATGTTTATAGTTATGGTATAGTGCTCTTGGAACTTGTGTGTTGCAGAAGGAACTTGGAGGTGAATGTGTCAGAGCCAGAAGAGATTGTTCTTTCTAATTGGGCCTACAAGTGCTTTGTGGCTGGAGAGCTGCACAAACTTTTGGGTGGTGAAGAAGTAGAGAGGAAGAGCTTGGAGCAAATGGTTAAGTTGGGACTTTGGTGCATTCAAGATGAGCCAGCTCTTCGTCCTTCTATCAAGAGTATTGTGCTGATGTTGGAAGGAATTACTGAAATTGCTGTTCCTCCATGCCCAACCACTACCTCCATGTAA 897 0.4515 MQSFSYKELQKASRNFKEELGKGAFGTVYLGVLQQGKKLVAIKRLEKMVEEGEREFRAEMRAIGRTHHKNLVRLLGYCTEGSRRLLVYEYMSNRSLADILFKSKTRPPWDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVCCRRNLEVNVSEPEEIVLSNWAYKCFVAGELHKLLGGEEVERKSLEQMVKLGLWCIQDEPALRPSIKSIVLMLEGITEIAVPPCPTTTSM* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1450 298 SMART serkin_6 14 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1450 298 CDD STKc_IRAK 20 284 - -
Vvi4g1450 298 PIRSF ILK 4 289 - -
Vvi4g1450 298 Gene3D Transferase(Phosphotransferase) domain 1 91 289 - -
Vvi4g1450 298 Coils Coil 42 62 - -
Vvi4g1450 298 FunFam S-receptor-like serine/threonine-protein kinase 1 90 - -
Vvi4g1450 298 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 91 289 - -
Vvi4g1450 298 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 293 - -
Vvi4g1450 298 ProSiteProfiles Protein kinase domain profile. 14 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1450 298 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Vvi4g1450 298 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vvi4g1450 298 Pfam Protein kinase domain 16 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1450 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vvi4g1450 298 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1450 Vvi-Chr4 21596240 21597136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1450 2 281 Glycoside Hydrolase AT3G07070 41.034 1.97e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1450 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1450 - - vvi:100259244 595.89