Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1449 ATGGGTGTTAGAGCTGAAACAGCGGAACCCAAGCTGATAAAGTTGGGTTCTTCACTTTTTCCACACAATGGATCCAGTTCATGGGTCTCACCCTCCGGCCATTTTGCATTTGGTTTCTACCCGCAAGGCACTGGATTTGCAGTAGGCGTATGGCTGGTCAGTCAATCTGGAAACACCGTTGTCTGGACTGCAAACCGAGATAAGCCGCTGGTGTCCTTCAACACGACTCTTGAATTCACCACAAATGGTAAGCTGCTTCTTCGAACTGGGCCGGGTGAACAAATAACCATTGCAGATGTGGCAGAATCCGCAGCCTCAGCTTCTATGCTCGATTCTGGTAATTTTGTTCTCTTCGGTGATAATTCTTCTTCTATCATCTGGCAAAGCTTCCAATACCCAACTGATACCCTTCTGGGAGGCCAGAATTTTTCCACCGGCGATATACTGTCTTCCAGGAAAACGGAATCTCCTGCTATAGGAGATTTTTATCTTAGTACGTCAGATGGACAGATTGTTTCCTATCCCTACAATCTGGCTGTTTCGGAGGACCCTTATTGGACTGTCGATGCACGAGATCTCAACGACATGGGGCTTTTAAGCTCATATGATGCTTTTACACTTACTCTAGCCAGCAACAATATCTCATCAGATGACGCCAAAAACGAGACCATCATTTACAGAGCAACTTTAGATGTTGATGGGATTTTCAGGTTGTATTCCCATAGCTTTGGGAACAGTAATATCTCCACTGTCTCCATTATGTGGTCGGCAATCAAAAACCCATGTGATGTGAAAGGTCTCTGCGGTGTTAATGCCTTATGTTCAAGCAATGGCACCAATGCCAACTGTTCTTGCGTTCCAGGGTTCGTATCCATTAACCGGGAGAAGTATTCGGGGTGCTACAGGAGCTTCAATAATGAAGAAGGATGCAGAGGACAAGAGCCAGAATCGATCTACAACATTACTACCTTAAGAAATGTGAAACTTATTTTAATCCTTGCTTCAAGTTTGGGTTCCATTGCTTTCTTATGTGCTCTAGTTGCAATGTCTAGCTTCTTTATATACAGAAGCCAAGTTCATCGGTACAGAAAGCTGTCAGAAACTGCAATGGAAGAGTTTACTCTGCGATCGTTTTCTTATAATGATCTGGAGAAAGCTACAGATGGGTTCAGGGAAGAGTTGGGTAGGGGTCCTTTTGGAGCAGTGTATAAAGGGACTATAGCTCAAGGCAACCAGACTATTGCTGTGAAGAGACTAGAAAAAGCTGTGGAAGAAGGAGAAAGGGAGTTCCAAGCAGAAATGGCCATAATTGGGCGAACCCATCACAGGAACTTGGTCCGGTTGCTGGGTTTTTGTATGCAGGGCTCTAGGAAGCTTCTTGTTTATGAATACATGAGCAATGGCTCACTTGCAGATCTTCTCTTCAATGGTGAAAAGCGCCCGATTTGGAGAGAAAGAGTCAGAATTGCCCTAGATGTAGCAAGAGGGATCTTCTACCTCCATGAAGAGTGTGAGGTCCACATCATCCATGGCAACATAAAGCCTAAGAACATACTATTGGATGATTCTTGGACTGCCAAGCTTTCAGATTTCAGGCTAGCAAGGCTTCTGAGGCCTAATCAAACTGGAACCATTTCTCGTCTCGGAGGGAGTAGTAGAGGCTATTCAGCACCCGAGCGGCAGAAGAGGATGTTGATATCAGTGGAAGCAGATGTCTACAGTTTCGGAGTAGTGCTATTGGAGATTGTGTGTTGCAGAAGTAATTTGGATATCAATGTTTCAACAGGAGACGAGATACTTCTTTGCAGTTGGGTGTACAGTTGCTTTGTGGCAAGAGAGTTGGAGAAGCTTGTGGAAGGTGAAGAAGTGAACATGAAAACCCTGGAAAGGATGGTGAAGGTTGGATTATTGTGCATTCAAGATGATCCAAGTCTGCGCCCTACAATGAAGAATGTGATCCTGATGTTGGAAGGGACCATGAATGTGCCTGTACCTCCATCTCCAACTCCTCTATTTTCCTGA 2022 0.4481 MGVRAETAEPKLIKLGSSLFPHNGSSSWVSPSGHFAFGFYPQGTGFAVGVWLVSQSGNTVVWTANRDKPLVSFNTTLEFTTNGKLLLRTGPGEQITIADVAESAASASMLDSGNFVLFGDNSSSIIWQSFQYPTDTLLGGQNFSTGDILSSRKTESPAIGDFYLSTSDGQIVSYPYNLAVSEDPYWTVDARDLNDMGLLSSYDAFTLTLASNNISSDDAKNETIIYRATLDVDGIFRLYSHSFGNSNISTVSIMWSAIKNPCDVKGLCGVNALCSSNGTNANCSCVPGFVSINREKYSGCYRSFNNEEGCRGQEPESIYNITTLRNVKLILILASSLGSIAFLCALVAMSSFFIYRSQVHRYRKLSETAMEEFTLRSFSYNDLEKATDGFREELGRGPFGAVYKGTIAQGNQTIAVKRLEKAVEEGEREFQAEMAIIGRTHHRNLVRLLGFCMQGSRKLLVYEYMSNGSLADLLFNGEKRPIWRERVRIALDVARGIFYLHEECEVHIIHGNIKPKNILLDDSWTAKLSDFRLARLLRPNQTGTISRLGGSSRGYSAPERQKRMLISVEADVYSFGVVLLEIVCCRSNLDINVSTGDEILLCSWVYSCFVARELEKLVEGEEVNMKTLERMVKVGLLCIQDDPSLRPTMKNVILMLEGTMNVPVPPSPTPLFS* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1449 673 Pfam Protein tyrosine and serine/threonine kinase 390 654 IPR001245 GO:0004672|GO:0006468
Vvi4g1449 673 Pfam D-mannose binding lectin 59 144 IPR001480 -
Vvi4g1449 673 Gene3D Transferase(Phosphotransferase) domain 1 465 667 - -
Vvi4g1449 673 Gene3D - 13 132 IPR036426 -
Vvi4g1449 673 CDD STKc_IRAK 394 658 - -
Vvi4g1449 673 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 148 IPR036426 -
Vvi4g1449 673 ProSiteProfiles Protein kinase domain profile. 388 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1449 673 ProSiteProfiles Bulb-type lectin domain profile. 13 130 IPR001480 -
Vvi4g1449 673 FunFam Putative receptor-like protein kinase 465 664 - -
Vvi4g1449 673 Gene3D Phosphorylase Kinase; domain 1 352 464 - -
Vvi4g1449 673 Coils Coil 611 631 - -
Vvi4g1449 673 SMART blect_4 19 133 IPR001480 -
Vvi4g1449 673 SUPERFAMILY Protein kinase-like (PK-like) 365 657 IPR011009 -
Vvi4g1449 673 FunFam S-receptor-like serine/threonine-protein kinase 357 464 - -
Vvi4g1449 673 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 329 667 - -
Vvi4g1449 673 Pfam S-locus glycoprotein domain 218 291 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1449 Vvi-Chr4 21559587 21561875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1449 325 663 Receptor kinase-like Gene Family AT5G59270 38.261 2.25e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g1449 PK_Tyr_Ser-Thr 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1449 - - qsu:111987199 683.33