Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1448 ATGGATCCACCATTCACCATAGGAGAGTATACGGTGAGGTCCAAAGTGGGACAAGGGCCCCAATCAACAGTTTGGAAGGCTGAGCAGAAATGTAGCGGTGAAGTAGTGGCTTTGAAGCAGGTCTATCTCTCCAAACTCAACCGTAACCTCAAGACCTCCCTGGACTGTGAGATCAACTTCTTGTCTTCTGTTAGCCACCCCAACATCATTCGCCTTCTTCATGTCTTCCAGGCTGAAGGTTGCATATTCCTGGTCCTGGAATTCTGCTCTGGGGGAGATCTAGAGTCTTACATTCGGCACCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTGGAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGGAACATTTTACTGTCGGGTCCTGAGAGTGATGTGCTGCTAAAGATAGCTGATTTTGGTCTCTCTCGAACTGTACATCCAGGTGAACATGCAGAGACAGTTTGTGGGACTCCATTATACATGGCTCCAGAAGTTCTGCGATTTAAAAAATATGATGAAAAGGTTGATATGTGGAGTCTTGGGGCAATTCTTTTTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAGTTGCTGCAGAACATTGAATCATGTAAAATGCTTCCATTTTCTCAGCTCATCTCTCCAGGACTGCATCCAGATTGTGTTGATCTGTGTACAAAACTATTGTCTACAAATCCAGTGCACCGCCTGTCCTTTGACGAGTTTTGTCGGCATAGGTTCTTGAGAGGAAAAGGGCAGGGGTGGTAA 828 0.4638 MDPPFTIGEYTVRSKVGQGPQSTVWKAEQKCSGEVVALKQVYLSKLNRNLKTSLDCEINFLSSVSHPNIIRLLHVFQAEGCIFLVLEFCSGGDLESYIRHHGRVQEWVARRFMQQLGAGLEVLHSHHIIHRDLKPGNILLSGPESDVLLKIADFGLSRTVHPGEHAETVCGTPLYMAPEVLRFKKYDEKVDMWSLGAILFELLNGYPPFCGRTNVQLLQNIESCKMLPFSQLISPGLHPDCVDLCTKLLSTNPVHRLSFDEFCRHRFLRGKGQGW* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1448 275 Gene3D Transferase(Phosphotransferase) domain 1 4 274 - -
Vvi4g1448 275 FunFam Serine/threonine-protein kinase ATG1t 3 274 - -
Vvi4g1448 275 PIRSF ILK 6 265 - -
Vvi4g1448 275 SUPERFAMILY Protein kinase-like (PK-like) 4 270 IPR011009 -
Vvi4g1448 275 SMART serkin_6 10 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1448 275 Pfam Protein kinase domain 10 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1448 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vvi4g1448 275 ProSiteProfiles Protein kinase domain profile. 10 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1448 275 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 269 IPR045269 GO:0004674|GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1448 Vvi-Chr4 21552038 21558551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1448 8 270 CBL-interacting serine-threonine protein kinases AT2G30360 35.926 1.80e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vvi4g1448 Pkinase 5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1448 - - vri:117913108 573.933