Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1447 ATGGCCTATGAACAGATCCCTTACCCGTTGGAGCCAAGCTACAATGAAAAACCTCTTGACTGTAGCTTGGAAACTGTATTTTCTTTCCAAACAGAAGATCCCATCTGCCCAAAAACCATCCAGGATGGTATTTTCCATGACCAGGACATGGAAAGACTGTTCCAAGTAGAGGATGGACTCCTGGACTTCAATTCCATCCATGGAGATCACATAATGGGTCTTGAAAGAGCAGAAGAAACTAAAATGGGGTATGATGCCAGCCAAGAAGCACCAGAACAAGTGGATTTTTTGGCAGATGAGAGTTCCCATTTGAATGGAATTCAAGAAGAGTTGATGGAAGACTGCGGCTTAGCTGATCTCTTACTAGCAGGAGCAGAAGCTGTTGAAGCACAAAACTGGCCACTTGCTTCAAGCATAATTCTGAAGCTTAACGATCTCCTTTTACATCAAGCAAAAGGGGACAACCAATTTAACAGATTGGCTTTGTTTTTCACTCAAGGCCTGTATTACAGAAGTATCAGCGCTCCTGAAATGCCGCTGCAGAAGCCTGTTTCTAGGCAGCCAAATACCATGTCTGCCTTTCAGATGCTCCAAGAGCTCTCCCCATATGTGAAATTTGCACATTTCACAGCCAATCAAGCAATCCTCGAGGCAGCAGAAGGCGGCCAAGAGGTTCATGTCATTGACTTCGACATCATGGAGGGGATACAAAGTTTATCATTTATCAAAACTTTCTTGGGAGGTGTGAGTAAACTATCCCCCAAGATTGTTGTTTTAGTAGAAGAAGACTTGTTTAATTTCTGTAAAATCCCAACCATGTCCTTTGTAGAGTTCTTCTGTGAGGCCCTTCACCACTACGCTGCTTTCTCTGATTCACTTATGAGCAGTTTCTCTGGTATATACAAAGTGGGGCTAAGATTGATAGAGGAGGAGTTCTTAAGAAATAGGATTTGGAATAGTCTGAGGCAGTTCCCTTGTGAGAAGAAAGAGAAGAGCTTGTGGGAAGATGGGTTTGCTTCATTGAAGAGGTTTAAGCCAATTCCACTAAGTTCATGCAATGTTGCTCAAGCCAAGTTCTTAGTTGGTCTCTTCAGTGGGGAATACTGGGTGAAACATGAGAACTGCAGGTTGGCCTTGTGTTGGAAATCAAGGCCTTTGACAACGGCTTCCATATGGATACATGCCCATTTCAAAAAATGA 1200 0.4317 MAYEQIPYPLEPSYNEKPLDCSLETVFSFQTEDPICPKTIQDGIFHDQDMERLFQVEDGLLDFNSIHGDHIMGLERAEETKMGYDASQEAPEQVDFLADESSHLNGIQEELMEDCGLADLLLAGAEAVEAQNWPLASSIILKLNDLLLHQAKGDNQFNRLALFFTQGLYYRSISAPEMPLQKPVSRQPNTMSAFQMLQELSPYVKFAHFTANQAILEAAEGGQEVHVIDFDIMEGIQSLSFIKTFLGGVSKLSPKIVVLVEEDLFNFCKIPTMSFVEFFCEALHHYAAFSDSLMSSFSGIYKVGLRLIEEEFLRNRIWNSLRQFPCEKKEKSLWEDGFASLKRFKPIPLSSCNVAQAKFLVGLFSGEYWVKHENCRLALCWKSRPLTTASIWIHAHFKK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1447 399 ProSiteProfiles GRAS family profile. 108 393 IPR005202 -
Vvi4g1447 399 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 242 388 IPR005202 -
Vvi4g1447 399 Pfam GRAS domain family 118 245 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1447 Vvi-Chr4 21549233 21550687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1447 242 392 GRAS Transcription Factor Family AT2G01570 30.625 3.25e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi4g1447 GRAS 1.6e-27 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1447 - - vvi:100248787 461.84