Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1433 ATGCTGGGAATTTCAGATTTTCCGGAGAGCTCCGGCACCGCCTCCGGCGGTCGGGAGGGTGAGGATGGAGGTGGTGGGGCTGTGCCCACTGGGTGTGAAGAAGAGGAGAGAGTGCGAGGCGAAGAGAGTGACCGGAATTTCGCCGGGAACCGGTGGCCTCGTGAGGAAACTTTGGCTTTGTTGAAGATAAGGTCTGATATGGACGTTGTTTTTAGGGACTCGAGTCTCAAAGCTCCTCTTTGGGAAGAGGTTTCTAGGAAATTGGGTGAGCTTGGATACCATCGAAACGCCAAAAAATGCAAGGAGAAGTTTGAGAACATCTTCAAATACCACAAAAGGACCAAGGAAGGGCGATCTAATCGACAAAACGGCAAAAATTATCGGTTTTTTGAGCAATTAGAAGCTCTAGATAATCATCCATTGATGCCACCTCCTTCCCCAGTCAAATATGAGACTTCTACACCCATGGCTGCATCAATGCCACAGACGAACCCCATAGACGTGACAAACGTTTCACAAGGCATCAATGCTGTGCCTTGTTCTATCCAAAAACCAGCTGTGGATTGCGTGGCAGCGTCTACTTCAACCACTTCCTCCTCAGGGAAAGAATCTGAAGGCAGCCGTAAGAAAAAGAGGAAGTGGGGTGTGTTCTTTGAGAAATTAATGAAAGAAGTGATAGAGAAGCAAGAGAATTTGCAAAGGAAGTTTATTGAGGCAATAGAGAAATGTGAACAGGATCGAATAGCTAGAGAGGAAGCTTGGAAGCTGCAAGAATTGGATAGAATTAAAAGAGAGCATGAGATTCTTGTTCAAGAACGGTCCATTGCAGCAGCAAAGGATGCGGCTGTGCTCGCATTCTTGCAGAAGATCGCCGAGCAAGCGGGTCCGGTGCAATTGCCTGAAAACCCTTCTTCAGAAAAAGTATTTGAGAAGCAAGATAATAGTAATGGTGAGAATTCTATTCAAATGAGCTCCTCCCGGTGGCCAAAAGCAGAAGTTGAAGCACTGATTAGACTTAGAACTAATTTCGATATGCAGTATCAAGAAAGTGGACCTAAAGGGCCCTTATGGGAGGAGATTTCACTAGCCATGAGAAAAATTGGTTATGAGAGGAGTGCCAAGAGGTGTAAAGAGAAATGGGAAAACATCAATAAGTACTTCAAGAGGGTAAGGGACAGCAACAAGAGAAGGCCTGAAGATTCAAAGACATGTCCATACTTTCATCAGCTCGATGCCCTCTACAAGGAGAAGACTAAGAAGGTAGAGAATCCAGATAACAATTCAGGCTATAACTTGAAGCCTGAAGACATTTTAATGCAAATGATGGGACAGTCAGAACAACGGCCACAGTCAGAATCAGTAACAGAAGAGGGTGGAAGCGAGAATGTCAATGCAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGCGATGAAGAAGGTGGAGATGGAGATGAAGATGATGAAGCAGATGGTTATCAGATTGTAGCTAATAATACTTCTTCAATGGCAATTATGGGGTGA 1533 0.4468 MLGISDFPESSGTASGGREGEDGGGGAVPTGCEEEERVRGEESDRNFAGNRWPREETLALLKIRSDMDVVFRDSSLKAPLWEEVSRKLGELGYHRNAKKCKEKFENIFKYHKRTKEGRSNRQNGKNYRFFEQLEALDNHPLMPPPSPVKYETSTPMAASMPQTNPIDVTNVSQGINAVPCSIQKPAVDCVAASTSTTSSSGKESEGSRKKKRKWGVFFEKLMKEVIEKQENLQRKFIEAIEKCEQDRIAREEAWKLQELDRIKREHEILVQERSIAAAKDAAVLAFLQKIAEQAGPVQLPENPSSEKVFEKQDNSNGENSIQMSSSRWPKAEVEALIRLRTNFDMQYQESGPKGPLWEEISLAMRKIGYERSAKRCKEKWENINKYFKRVRDSNKRRPEDSKTCPYFHQLDALYKEKTKKVENPDNNSGYNLKPEDILMQMMGQSEQRPQSESVTEEGGSENVNANQEEEEEEEEEEEDGDEEGGDGDEDDEADGYQIVANNTSSMAIMG* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1433 510 FunFam Trihelix transcription factor GT-2 52 113 - -
Vvi4g1433 510 MobiDBLite consensus disorder prediction 443 462 - -
Vvi4g1433 510 PANTHER FI21293P1 21 474 - -
Vvi4g1433 510 MobiDBLite consensus disorder prediction 1 51 - -
Vvi4g1433 510 Pfam Myb/SANT-like DNA-binding domain 50 136 IPR044822 -
Vvi4g1433 510 Pfam Myb/SANT-like DNA-binding domain 326 413 IPR044822 -
Vvi4g1433 510 MobiDBLite consensus disorder prediction 463 495 - -
Vvi4g1433 510 Coils Coil 222 246 - -
Vvi4g1433 510 CDD GT1 50 115 - -
Vvi4g1433 510 ProSiteProfiles Myb-like domain profile. 44 108 IPR001005 -
Vvi4g1433 510 SMART sant 324 386 IPR001005 -
Vvi4g1433 510 SMART sant 48 110 IPR001005 -
Vvi4g1433 510 Gene3D - 52 113 - -
Vvi4g1433 510 Gene3D - 328 389 - -
Vvi4g1433 510 MobiDBLite consensus disorder prediction 297 325 - -
Vvi4g1433 510 MobiDBLite consensus disorder prediction 32 51 - -
Vvi4g1433 510 FunFam Trihelix transcription factor GT-2 328 389 - -
Vvi4g1433 510 MobiDBLite consensus disorder prediction 442 510 - -
Vvi4g1433 510 CDD GT1 326 391 - -
Vvi4g1433 510 ProSiteProfiles Myb-like domain profile. 320 384 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1433 Vvi-Chr4 21316201 21318165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1433 326 423 Trihelix Transcription Factor Family AT1G76880 40.816 3.53e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi4g1433 Myb_DNA-bind_4 3.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1433 - - vvi:100247259 934.48