Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1421 ATGGTGGTGGTTCAAGTGTCACTGGGAGGAATTAATATTATGTACAAGTTGGCTAAGAGTGACGGCATGAGCATGAAGGTTTTAATCGCCTGCAGATATATATTCGCTGCAGCTTTTACGGTTCCACTTGCTTTGATATTTGATCGGAAGAGTAGGCAAAAAATGACATGGATGATCTTCTTGCAAGGTTCCTTATGTGGTTTATTTGGGGGGTCATTAGGTCAAAACTTATATGCTCAGAGCTTGACTCTAACGTCCGCAACTTTTGCAGCAGCAATGACTAACATTATTCCAGCCATGGCATTTGTCCTGGCAATTGTCTTGAGGATGGAAAGATTAGCAATTGGCACGGTTGCTGGAAAGGCTAAGGTGTTGGGCACTCTATTAAGCATAAGTGGTGCATTGGTTCTCACATTTTACAAAGGAGTAGAGCTCAATTTGTGGTCAACTAACATCAACTTGCTGCATCATGGTGCAGCAACCTCACAGCAATCATCTAATGATCAAGTCTTGGGCTCAATCTTAGCTGTTGTTGCTTGTATGTGCTTTGCAGTTTGGTTGATAATCCAGGCCAAGATTAGTATGGTGTATCCAAGCTACTCTGGAACTGCTCTTACTTGTGTCTCTGCAGCGATTCAGTCAGTTGTATATGCCATGTGTGCTGAGAAGAAATGGTCAGCATGGAAACTTGGTTGGGACATAAGACTTCTCACTGTTGTTTACACGGGAGTGTGGGCCACTGGATTGATGGTTGCAATAATGAGCTGGGCTGCAAGGCTGAGGGGGCCATTGTTTGTATCTTCTTTCTATCCCTTAATACTTGTAACTGTTGCAATACTGGGGTCTCTCTTACTCGACGAGCAGCTATACTTGGGAAGCATAATAGCAGTAGTGTTGATCCTAGTGGGCTTGTATGGTGTTTTGTGGGGAAAAGGCAAGGAGATGAAGCAGAGCGCCCAAGTAGATGGAGCAAAAAGCTCTACGGAGCCAGAATTGAGAGGCATTGTCATAGAAACCTCGTCTAGTACTGAGGGTAAACCGACCGCAACTAGTACTATTTGTCCCATCCAAGCTGCTGACCGAGGATCTGGAGCGTTCCTCTTTGCCCTCATGTTTTCTAATGCACAAAGTGTAGTGATTTTATCTTCTTTGTTTTGGTCATATTTATAA 1170 0.4376 MVVVQVSLGGINIMYKLAKSDGMSMKVLIACRYIFAAAFTVPLALIFDRKSRQKMTWMIFLQGSLCGLFGGSLGQNLYAQSLTLTSATFAAAMTNIIPAMAFVLAIVLRMERLAIGTVAGKAKVLGTLLSISGALVLTFYKGVELNLWSTNINLLHHGAATSQQSSNDQVLGSILAVVACMCFAVWLIIQAKISMVYPSYSGTALTCVSAAIQSVVYAMCAEKKWSAWKLGWDIRLLTVVYTGVWATGLMVAIMSWAARLRGPLFVSSFYPLILVTVAILGSLLLDEQLYLGSIIAVVLILVGLYGVLWGKGKEMKQSAQVDGAKSSTEPELRGIVIETSSSTEGKPTATSTICPIQAADRGSGAFLFALMFSNAQSVVILSSLFWSYL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1421 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 32 138 - -
Vvi4g1421 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 227 313 - -
Vvi4g1421 389 Pfam EamA-like transporter family 171 308 IPR000620 GO:0016020
Vvi4g1421 389 Pfam EamA-like transporter family 7 138 IPR000620 GO:0016020
Vvi4g1421 389 PANTHER WAT1-RELATED PROTEIN 1 320 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1421 Vvi-Chr4 21163845 21172634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1421 1 332 Nodulin-like Gene Family AT1G25270 40.413 2.62e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1421 - - vvi:100262524 677.167