Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1420 ATGGCCACTGGAAAGTTGAGGAACCTTTTGGAAGGGCTGAAGCCAGCCATGACAATGGTGATAGTTCAGATAATATTTGGAGGGCTAAATATTATGTACAAACTGGCTAGAAATGATGGCATGAGCATGAAGATTTTGGTCGCCTACCGAAATATCTTTGCAACAGCTATTATGGTTCCACTTGCTCTAATCTTTGAAGGGAAGAGTAGGCCAAAACTGACATGGATGATCTTCCTCCAGGGCTCATTATGTGGATTATTTGGAGGGTCATTAGGTCAAAATTTATATGCCGAGAGCCTAAGCTTAACGTCAGCAACATTTGTAGCGGCAATGACAAACCTGGTTCCAGCTATGACATTTGTCATGGCAGTTTTCTTAAGGATGGAGAGATTAGCAATTGGAACAATTGCGGGAAAAGCTAAGTTAATGGGGACTATAATGAGCCTAGGTGGTGCAATGATTCTAACATTTTACAAAGGAGTAGAGATCAAGTTATGGTCAACCAACATCAACCTACTACATCATGGTGCTGCAGCATTACAAGAGTCGTCTCCTAATCAAGTGTTGGGCTCACTATTGGCTGTGGCTAGTTGTGTCTGTATTGCAGTTTGGTTGATAGTCCAGACTAAGATGAGCATGGTGTATCCAAGCTACTCCGGAACTGCTCTAATGTGTGTTTGTGCATCAATTCAATCGGTTGTATATGCCATGTGCACTGAGAGGGACTGGTCCGCATGGAAACTTGGTTGGGACATTAGGCTTCTCACTGTTGTTTACTCAGGAGTGTTGGCCTCTGGATTAATGGTTACACTAATGACCTGGGTTTCAAGGATGAGAGGCCCATTGTTTGTATCTTCTTTCTTTCCCTTAATGCTTGTAACCGTTGCAATACTTGGGTCACTGTTACTCCACGAACAGCTACATATAGGAAGCATAATTGCAGCAGTGTTGATCATAGTGGGCTTGTATATTGTTTTATGGGGAAAAGGCAAGGAAATGAAGCAGACCGCCCAAATCCATGCAGCACAAAGCTTTAGCGAACAAGATCTGAGACATATTGTCATAGAAAATTCAAGTAACAGTGAGTGTAAACCAGAAGCAAGTGGTATTATTGGTCCCATTGAACCTGCTGACCTAGGATCTGGAGTGCCATCTGCAGCTGCAGTGGTGAACAAATAA 1179 0.4283 MATGKLRNLLEGLKPAMTMVIVQIIFGGLNIMYKLARNDGMSMKILVAYRNIFATAIMVPLALIFEGKSRPKLTWMIFLQGSLCGLFGGSLGQNLYAESLSLTSATFVAAMTNLVPAMTFVMAVFLRMERLAIGTIAGKAKLMGTIMSLGGAMILTFYKGVEIKLWSTNINLLHHGAAALQESSPNQVLGSLLAVASCVCIAVWLIVQTKMSMVYPSYSGTALMCVCASIQSVVYAMCTERDWSAWKLGWDIRLLTVVYSGVLASGLMVTLMTWVSRMRGPLFVSSFFPLMLVTVAILGSLLLHEQLHIGSIIAAVLIIVGLYIVLWGKGKEMKQTAQIHAAQSFSEQDLRHIVIENSSNSECKPEASGIIGPIEPADLGSGVPSAAAVVNK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1420 392 Pfam EamA-like transporter family 15 155 IPR000620 GO:0016020
Vvi4g1420 392 Pfam EamA-like transporter family 189 326 IPR000620 GO:0016020
Vvi4g1420 392 PANTHER WAT1-RELATED PROTEIN 14 337 IPR030184 GO:0016020|GO:0022857
Vvi4g1420 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 331 - -
Vvi4g1420 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1420 Vvi-Chr4 21152798 21154837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1420 13 353 Nodulin-like Gene Family AT1G25270 41.547 3.32e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1420 - - vvi:100264216 737.258