Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1412 ATGGCTGGAAAGTTGGTATGCCTTTTCGAAGGGCTGAAACCAACGATAGCAATGGTGATGATTCAGATAACATTTGGAGGGATACACGTCCTCTACAAATTAGCTAAGAACGATGGCATGAGCATGAAAATCATGATCGCCTACAGAATGATCTTTGCCACAGCTTCAATGGTTCCTCTTGCTTTAATCTTAGAACGGAACTCTAGACCAAGATTGACAGGACGAATCTTCTTCCTAGGTTTCATCTTAGGCATGTTTGGGGGCTCATTAACCCACAATTTATATGTTGAGAGCTTGGTTTTAACATCTGCAACATTTGTAGCAGCAATGACTAATCTTACTCCTGCTCTGACATTTATCATGGCTATCATTTTAAGGATGGAAAGATTGGCAATTGGAACTGATGCTGGAAAGGCTAAAGTTTTGGGCACTATATTGAGCATAGGCGGTGCAATGATTTTTACATTTTACAAGGGAATTGGGATCAATGTGTGGACGACCAACATTAACTTGCTACATCATCATGCCATGACAACATCAAAGCAGACATCGGCAAAGGAAGCATTGGGCGCATTGCTGGGTGTGGGCAGTGGTGTGTCTATCGCAATCTGGATGATAATCCAGGTGATTTTCCTTTTGAGATTTTAA 648 0.4151 MAGKLVCLFEGLKPTIAMVMIQITFGGIHVLYKLAKNDGMSMKIMIAYRMIFATASMVPLALILERNSRPRLTGRIFFLGFILGMFGGSLTHNLYVESLVLTSATFVAAMTNLTPALTFIMAIILRMERLAIGTDAGKAKVLGTILSIGGAMIFTFYKGIGINVWTTNINLLHHHAMTTSKQTSAKEALGALLGVGSGVSIAIWMIIQVIFLLRF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1412 215 Pfam EamA-like transporter family 16 154 IPR000620 GO:0016020
Vvi4g1412 215 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Vvi4g1412 215 PANTHER WAT1-RELATED PROTEIN 14 211 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1412 Vvi-Chr4 21051496 21053877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1412 12 208 Nodulin-like Gene Family AT1G25270 40.500 5.41e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1412 - - vri:117913332 399.053