Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1410 ATGGATGCTAAGAAGCCCTTCGTCGCCGTTCTTCTCATACAAACTATATATGCTGGCATGTTCTTAGTCTCCAAGGCTGCATTTAATGTAGGTATGAATAATTTCATCTTCGTCTTCTACAGACAGGCTGCAGCAACTGTTTTCTTGGTTCCTATTGCCATCATTTTTGAGAGAAAAAATGTGCCACCACTCTCTTTCGTGACCTTCTGCAAAATTTTTATGCTTTCTCTATTTGGGATTACTCTAAGCTTGGATGTTAACGGTGTTGCCCTCATTTATACATCTGCAACTTTGGCTGCTGCAACAACAAATTGCCTTCCTGTCATTACCTTTTTCTTGGCCGTTTTACTCAGGATGGAAACTGTGAAGTTGAGGACATCCTCTGGCATGGCAAAGATTGCAGGTGTTTTAATTTGCATAGCAGGTGCTGCAACAATAGCATTTTACAAGGGCCCCCATTTGCAACTCATGTTACATCATCACCTTTTTGGACACCATACCAGCCACGAACATCAATCTCATGTAAGCTCTGGTGCAACGTGGGTGAAGGGATGCTTACTCATGCTCATGTCCAACACCTTCTGGGGCTTGTGGCTTGTATTGCAGGCTTACATCATGAAAAGCTACCCTGCAAAGCTTCTGCTGACAACCCTACAGTGCCTTTTGAGCTCAATTCAATCATTTTTCATTGCTATTGCTTTGGAAAGAGACCCTGATCAGTGGAAGCTGGGCTGGAATGTGAAACTCGTAGCTGTAGCCTACACGGGAATTGTTGTGACAGGTGTTACATACTACCTACAAACATGGGTCATCGAGAAGAAGGGGCCTGTTTTTCTAGCCATGTCCACACCATTTGCCCTAATCATTACTATATTTTGTTCAGCAATTTTCTTAGGCGAGGCCATTAGTTTGGGAAGTATCTTAGGTGGGATCTTGTTGGTTGGAGGGCTATATAGTGTTTTATGGGGGAAGAGCAAAGAACAGAAGATGGAAAAAACTTGTTCGACAGCCCAAGCTGAGAAGGAAACAGAGCTTAAAGAAGAAGTGGCTGCTCAGAGTCCACCCCCACCATTTTTTGTGTAA 1083 0.434 MDAKKPFVAVLLIQTIYAGMFLVSKAAFNVGMNNFIFVFYRQAAATVFLVPIAIIFERKNVPPLSFVTFCKIFMLSLFGITLSLDVNGVALIYTSATLAAATTNCLPVITFFLAVLLRMETVKLRTSSGMAKIAGVLICIAGAATIAFYKGPHLQLMLHHHLFGHHTSHEHQSHVSSGATWVKGCLLMLMSNTFWGLWLVLQAYIMKSYPAKLLLTTLQCLLSSIQSFFIAIALERDPDQWKLGWNVKLVAVAYTGIVVTGVTYYLQTWVIEKKGPVFLAMSTPFALIITIFCSAIFLGEAISLGSILGGILLVGGLYSVLWGKSKEQKMEKTCSTAQAEKETELKEEVAAQSPPPPFFV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1410 360 Pfam EamA-like transporter family 8 145 IPR000620 GO:0016020
Vvi4g1410 360 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020
Vvi4g1410 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 150 - -
Vvi4g1410 360 PANTHER WAT1-RELATED PROTEIN 5 333 IPR030184 GO:0016020|GO:0022857
Vvi4g1410 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1410 Vvi-Chr4 21012656 21016175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1410 1 254 Nodulin-like Gene Family AT5G64700 63.178 2.33e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1410 - - vvi:100242046 668.307