Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1408 ATGAAACTTCTCTCTTCAAGACCCATTTTCCTCTTCGCTTCTTATTTTTCTTCTCCACCGCCATACCTGTTCTTCATTTCTCATTTCACAACTTCTACAACCCCATTGTCTTCTTCTTACAGGCGCCACGAAGATGAGTCCCGAACCGTGAAAGTCTCGGTGTGGTGGGACTTCGAGAATTGTAATATCCCGGCGGGTGTTAACGTCTTCAAAATTGCGCATAGCATTACTGCTGCAGTTAGGGCTAATGGAATCAAGGGTCCCCTTCAGATTACGGCGTTTGGTGATGTTTCGCAGCTCGCGAGATCCAATCAGGAGGCTTTGTCTTCTACGGGAATCAATCTCGCTCACATTCCTAACGGTGGAAAGAACAGTGCTGATAGATCTCTTCTTCTAGATCTTATGTATTGGGTCTCTCAAAATCCTCCACCTGCACACCTTTTTTTAATTTCGGGTGATAGGGATTTTGCTAGCATTTTACACCGGTTAAGAATGAGCAACTACAATGTCTTGCTCGCAAGTCCAGGAACTGCTTCTGGAGTTCTCTGCAGTGCTGCAAGTATCATGTGGAATTGGAATGCTTTGGTTAGAGGGGAAAACCTTACTGGGAAACATTTTAACCAACCCCCAGATGGTCCCTATGGTTCTTGGTATGGTCATTTTAAGGTGCCTCTTGAAGACCCATTCTCAGTTGTTGAGCAACCATCATCTCCACAGGCTGAGGAGTTGTCTGAGCCTGGTTTAGATTCTAAGCTTCGTCCAATTCCAAGGATTGTGATGAGGCAGATTCGTCATATATTAAACTCGTACCCCAAAGGGGTTTCCATCACAGAACTCCGTTCAGAGTTGGGAAAAAGTAATGTGAAAATTGACAAAGATTTCTATGGATATAGAAAGTTTTCCCACTTTCTTTTGTCCATGCCGCACATTTTAAAGCTTCAAAGTAGAGGTGATGGCCAGTACTGTGTTCAAAGAATCGCATCAAAAGCTCCTGAACCTGTTGAGTCCATTGCACCTATATCAGTGGGGCCTGTTTCTAATAGTGAAAACAGGGAGCTCAGTTTAAATCCAAAGCTACACAACACGGAACTTTCTGGTAGTGGAGCTGTGAATGGGAAGTCATCACTGCCTCTATCCCCAGAACTAAAGGTCAAAGAGCCTCCAACAAAAGTGGAGGAGCCTCCAATAAAAGAGGAAGAGCCCCCTCCACTTGGCCAGAAGGTTGCTGAAACAACTAATGCACATGCAGCAGAGGAGCATTTGTCTCCTGTCGAGGGGCCAGAATCTTCGTCTGAAGTAGGCTTCTTTAAAAAAATATGGAGAAAATGGTTTAGCAGTAAGGACGGTGGTTTTGAGAAGGAAAGTAATAGAATCCCTGAAAAATGTGGTACTTGTGATGATAGCTCTGAGAAGATCAAATCTGAGGAAAAATGCATGGATTCCAAAAGCCAGCAAGCTGATCCAATAGAAATGGTGTCAATTTCTTCATCCAATGATGATGGGTCATTTCTGGACAAGAAATCCACCAGGAGTTCTGAAACATATGATGATAAATCTATTGCAAGCTCTAACTTCTTCAACAAGGTTGCAAATTGGTGTAAGTTTTGGAGAGCTAGCCCACAGTCTGACGTATTGAGTGATCAATCCTGGGAAAGACTGAACCAGATTAACAGTCATTCTGAAAAGCATGATTGTTTCTCAGAGGATTCTCTTTGGAGTGACATCAAATCATTTATGGCCACACCAAAAGGATCAGTTCTTGTTTCCCAGTCAAGGACCAGGGAACAAATGGCACAAAATCTGCGCAAGGAAGGGCCTCTGGTTCTTGGATCTCTCACGGAAACTGATCTGCTTCACTTGGTGGATTTATTAATTTCAGATAAAAAATGGGTTGAAGAAAACCCCACTCAAACTTCACCTTTCAAAGTCATTTGGCCTGTTGGAAAGAAATCTACTTCAAGTCAACCTCATGTTTCAAATGGGTTGAGCTCAATCTTTTTAGGCACGCAATCACAGTCAAACTTGCAGAGGCAACTGGAACATGGAGAGAAGAGAGATCAAAATTTACCTCATACTGGAGCGTCTCGACCTGTCATTGACAAGAAAATGCTGGACAGATCTAGAAGTGAGATATTGGCCCATTGTCAAAAGCTTGTGGATGAGATTTTGAAGGAATACCCAGAAGGGTTCAATATGGGTGCCTTCAGAAAATTGTTCCTAGAGAGGTATGGCTATTCACTTGATGTACAGAAGCTTGGTTACCAAAGATTGGCATCACTTCTGCAGATAATGCCTGGGGTGAAAATAGAATCTACCTATATTGTTCCTTCCTGGACAGCTTCTAAAGGTTCCCTTTTGGAAAGTTCTGATACTAATGGTCAGGAGGACAATGTCAGTGGAAAGGTAGGTAATTCAGATAGTGAATTGTCTGATGCATCCAGGAAGGAAGATGATCTTGACTCTCCATGGGAAGAACTTGGGCCTGTTGCTGACACAAATTCTAACAGAAATGAAATGGAATCAGAGTTACGAAGGAAGAAAAAAGAAGAGACAGTGAGACAGGTACATCTTGACTATGAACCTTCCCCATCAGATGATGATTTTTCAGATTCAGAAGGGGAGACCTCGCTCTCAACTGGAACTGACAGGCAAGAGAGGCCTAAAATAAGCAAGGAAGACAGCTCATTATTACGGATTCTTGATTCATGGTACAGCAGTAAAGAAGATAACAAGAGAAGGGATGGGGTAGAAAATGCTGATGGCATGATTGATTGTTCCAGAAATGATTTGAAGTCATCTGGTTCATCTGGATTTTTCTCTGAGGATGACACTTCTCCAATAAACTGCAGAAAGAAGCAAAGACCTGTTAGGAGCTATTCTTTTGTTTCAGACCATGGAGATGATAAGGACAAATTGATTGATGGTATATTAGGGAGCTTGAAAAAATCAGGTGAGTCAAGGATGCATAGCTGA 2973 0.4252 MKLLSSRPIFLFASYFSSPPPYLFFISHFTTSTTPLSSSYRRHEDESRTVKVSVWWDFENCNIPAGVNVFKIAHSITAAVRANGIKGPLQITAFGDVSQLARSNQEALSSTGINLAHIPNGGKNSADRSLLLDLMYWVSQNPPPAHLFLISGDRDFASILHRLRMSNYNVLLASPGTASGVLCSAASIMWNWNALVRGENLTGKHFNQPPDGPYGSWYGHFKVPLEDPFSVVEQPSSPQAEELSEPGLDSKLRPIPRIVMRQIRHILNSYPKGVSITELRSELGKSNVKIDKDFYGYRKFSHFLLSMPHILKLQSRGDGQYCVQRIASKAPEPVESIAPISVGPVSNSENRELSLNPKLHNTELSGSGAVNGKSSLPLSPELKVKEPPTKVEEPPIKEEEPPPLGQKVAETTNAHAAEEHLSPVEGPESSSEVGFFKKIWRKWFSSKDGGFEKESNRIPEKCGTCDDSSEKIKSEEKCMDSKSQQADPIEMVSISSSNDDGSFLDKKSTRSSETYDDKSIASSNFFNKVANWCKFWRASPQSDVLSDQSWERLNQINSHSEKHDCFSEDSLWSDIKSFMATPKGSVLVSQSRTREQMAQNLRKEGPLVLGSLTETDLLHLVDLLISDKKWVEENPTQTSPFKVIWPVGKKSTSSQPHVSNGLSSIFLGTQSQSNLQRQLEHGEKRDQNLPHTGASRPVIDKKMLDRSRSEILAHCQKLVDEILKEYPEGFNMGAFRKLFLERYGYSLDVQKLGYQRLASLLQIMPGVKIESTYIVPSWTASKGSLLESSDTNGQEDNVSGKVGNSDSELSDASRKEDDLDSPWEELGPVADTNSNRNEMESELRRKKKEETVRQVHLDYEPSPSDDDFSDSEGETSLSTGTDRQERPKISKEDSSLLRILDSWYSSKEDNKRRDGVENADGMIDCSRNDLKSSGSSGFFSEDDTSPINCRKKQRPVRSYSFVSDHGDDKDKLIDGILGSLKKSGESRMHS* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1408 990 PANTHER LIMKAIN B LKAP 38 721 IPR024768 GO:0005777|GO:0010468
Vvi4g1408 990 MobiDBLite consensus disorder prediction 907 969 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 450 470 - -
Vvi4g1408 990 Gene3D - 43 194 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 385 404 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 786 893 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 359 406 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 676 695 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 879 893 - -
Vvi4g1408 990 Pfam OST-HTH/LOTUS domain 259 322 IPR025605 -
Vvi4g1408 990 Pfam OST-HTH/LOTUS domain 712 771 IPR025605 -
Vvi4g1408 990 Gene3D - 706 774 IPR041966 -
Vvi4g1408 990 Pfam NYN domain 51 186 IPR021139 GO:0004540
Vvi4g1408 990 Coils Coil 829 849 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 837 863 - -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 928 943 - -
Vvi4g1408 990 ProSiteProfiles OST-type HTH domain profile. 711 790 IPR025605 -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 786 807 - -
Vvi4g1408 990 CDD LOTUS 712 769 - -
Vvi4g1408 990 Gene3D - 258 327 IPR041966 -
Vvi4g1408 990 CDD PIN_limkain_b1_N_like 51 175 - -
Vvi4g1408 990 Pfam OST-HTH Associated domain 591 638 IPR025677 -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 359 374 - -
Vvi4g1408 990 CDD LOTUS 256 325 - -
Vvi4g1408 990 ProSiteProfiles OST-type HTH domain profile. 255 327 IPR025605 -
Vvi4g1408 990 MobiDBLite consensus disorder prediction 808 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1408 Vvi-Chr4 20988399 20996526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1408 50 198 C2H2 Transcription Factor Family AT5G61190 46.309 2.76e-39 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1408 - - vvi:100259153 1927.52