Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1406 ATGGATAGGGACGAGTTTCGATTGATTTTGAGGAACTCCGGTGTGGATGTGTGGGAGTTCATCAATACGGCGATCTCCGTTGCCTATTCCGATTATGGAGATGAACTGAGGCACCGGAGGGATGGAATCGTGGAGAGGATGTACATGTCTTCTCGCTGCGGGAGCTGTAATCTTCGTTATCAACATTCTGGATTGGATAAGGGTTGTGATGAGGAGAAAGAGGATGAAAAAGACGACGAAAAAGACAAGTCCCCGCTCACTCCGCAATCCATTAATAGAAGTGGAAGTGAAGATCGGTATGGAGGATTGCTGGATGAAGAGGAAGCCAGGATTCTTGATATAAAGGAACATCTTGAAGCTCCTGACCAGCCTGATGATTCTATTGTGGATTTGTTGCAAACTCTGGCCGACATGGACATAACCTTCAAAGCTCTCAAGGAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAACGATGTGCGGAGATTGGTAAAGCATCTTGTCAGGAAATGGAAAGATCTGGTAGATGAATGGGTGAAGTCGAATCCTGCTGGAGAGTTCACATCCTCTGCCCTAATGGAAGGAGACTCACCACCACAGAAAATTCCCCGGACTGGTCATCATCAGGTACCTGATTTTGGGTACTCGCCAAATCCACAGAATGGAAGTTCTGGGTCGGACAAAAACAATGCAGAACCAGAACCAAAGGTGAAGGCAATTCCTAGGAAAGAAGTTCCTACTAGGCCAGCTCAATCAGCCCCTGTGTCTTCTTCCTTTCCTCCTCCAAATAAACAGAGGGACACCGCAATTGATCCTGACAAATTCGCTTCAGCAAGAAAGCGGCTTCACGAGAACTACCAAGAAGCTCAAAATGCCAAAAAGCAAAGAACAATTCAAGTGATGGACATTCACGATATTCCGAAACCAAAGAATACCTTCTTTGCCAAGCCCAAGGTGGGTTCTCAGGGGAGGCACCGGTGA 996 0.4679 MDRDEFRLILRNSGVDVWEFINTAISVAYSDYGDELRHRRDGIVERMYMSSRCGSCNLRYQHSGLDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDRYGGLLDEEEARILDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKDLVDEWVKSNPAGEFTSSALMEGDSPPQKIPRTGHHQVPDFGYSPNPQNGSSGSDKNNAEPEPKVKAIPRKEVPTRPAQSAPVSSSFPPPNKQRDTAIDPDKFASARKRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKPKVGSQGRHR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1406 331 Pfam TFIIS helical bundle-like domain 131 180 IPR017923 -
Vvi4g1406 331 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 111 190 IPR035441 -
Vvi4g1406 331 SMART TFS2_5 104 182 IPR003617 GO:0005634
Vvi4g1406 331 ProSiteProfiles TFIIS N-terminal domain profile. 106 183 IPR017923 -
Vvi4g1406 331 CDD TFIIS_I 108 181 - -
Vvi4g1406 331 MobiDBLite consensus disorder prediction 309 331 - -
Vvi4g1406 331 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 331 IPR044790 -
Vvi4g1406 331 MobiDBLite consensus disorder prediction 219 235 - -
Vvi4g1406 331 MobiDBLite consensus disorder prediction 192 283 - -
Vvi4g1406 331 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 104 193 IPR035441 -
Vvi4g1406 331 MobiDBLite consensus disorder prediction 64 100 - -
Vvi4g1406 331 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1406 Vvi-Chr4 20976206 20978154 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi4g1406 Med26 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1406 - - vvi:100260896 655.595