Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1397 ATGGTGAAATCCCCAGAAGAAGAACACCCACAGAAGGCTTTTGGCTGGGCTGCGAGAGATCCCTCTGGGACTCTCTCTCCATTCCATTTCTCAAGAAGAGAAAATGGTGATGAGGATGTCACAGTCAAGATCCTCTATTGTGGGGTTTGTCATTCCGACTTGCATTCTGTTAAGAATGAATGGGGGATCACTAGGTACCCTATTGTTCCAGGGCATGAAATTGTTGGCATTGTGATCCAACTTGGAAATAATGTGAAGAAATTCAAAATGGGTGACCGAGTTGGGGTTGGTGTCTTAGTGGGCTCTTGCAAGACATGCGAGACTTGCCAACAAGACTTGGAGAATTACTGCCCCAGTATGATATTTACTTATAACTCCACTTCTCAAGATGGGACGAGGACTTATGGTGGTTATTCCGATATAGTGGTTGTTGACCAGCGGTATGTGCTCCGCATTCCTGATAACATGCCCTTAGATGCAGGGGCACCGCTACTTTGTGCTGGAATAACAGTGTATAGCCCAATGAAATACTATGGAATGACCGAGCCAGGCAAACATTTGGGAGTGGCAGGACTTGGTGGGCTTGGTCATGTTGCCGTGAAATTGGGCAAGGCATTTGGACTTAAGGTTACTGTTATTAGTACCTCGCCAAACAAGGAGGATGAAGCGATTAACAAACTTGGGGCTGATTGTTTCCTTGTTTCCACCAACCCTGAAAAAGTGCAGGCGGCTCTGGGTACTATGGACTACATCATCGATACAGTGTCTGCAATTCATTCCCTGGGTCCTCTCCTTGCCATGCTGAAGCTGAATGGAAAATTGATCACTGTGGGCTTGCCTGATAAACCCCTGGAACTGCCTATCTTCCCATTAGTTATGGGGCGGAAGCTCATTGGGGGAAGTGACATAGGAGGGATTAAAGAGACACAGGAAATGCTAGACTTTTGTGCAAAACACAATATTACTGCAGACATTGAGCTGATCCAGATGGACTACATTAACACGGCCATGAAGCGGCTTTCCAAATCTGATGTCAAGTACCGGTTTGTGATAGATGTCGCAAACTCCTTGTCCCAGTAG 1080 0.463 MVKSPEEEHPQKAFGWAARDPSGTLSPFHFSRRENGDEDVTVKILYCGVCHSDLHSVKNEWGITRYPIVPGHEIVGIVIQLGNNVKKFKMGDRVGVGVLVGSCKTCETCQQDLENYCPSMIFTYNSTSQDGTRTYGGYSDIVVVDQRYVLRIPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKLGKAFGLKVTVISTSPNKEDEAINKLGADCFLVSTNPEKVQAALGTMDYIIDTVSAIHSLGPLLAMLKLNGKLITVGLPDKPLELPIFPLVMGRKLIGGSDIGGIKETQEMLDFCAKHNITADIELIQMDYINTAMKRLSKSDVKYRFVIDVANSLSQ* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1397 359 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Vvi4g1397 359 FunFam probable cinnamyl alcohol dehydrogenase 16 175 - -
Vvi4g1397 359 CDD CAD1 14 352 IPR047109 GO:0016616
Vvi4g1397 359 SUPERFAMILY GroES-like 19 185 IPR011032 -
Vvi4g1397 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Vvi4g1397 359 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Vvi4g1397 359 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Vvi4g1397 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vvi4g1397 359 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Vvi4g1397 359 Gene3D - 167 323 - -
Vvi4g1397 359 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Vvi4g1397 359 Gene3D - 16 353 - -
Vvi4g1397 359 PANTHER ALDEHYDE REDUCTASE 5 356 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1397 Vvi-Chr4 20891604 20894151 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1397 11 357 Monolignol Biosynthesis Gene Families AT2G21730 72.779 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1397 K00083 - vvi:100245522 707.212