Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1393 ATGGAGTGGGAGAAGCAAGAACAACACCATCACCACCGCCACCACCACCAACAAGAAGAACTGGAGCAGAATGCAAATGTAAATGGAAATGGAAATGGGGGTGTATTTTACGTGAAGGTGATGACGGACGCCCAAGTGGAAATTCTGAGGAAGCAGATATCTGTGTATGCTACCATATGTGAACAGCTGGTTGAGATGCATAAATCACTCACTTCTCACCAAGATCTTGCAGGAGTCAGACTGGGAAATCTATATTGTGACCCATTAATGACATCTACTGGTCACAAAATTTCTGCCAGACAGCGGTGGACTCCGACACCAGTGCAGCTTCAAATTCTTGAGCGTATTTTTGATCAAGGATATGGTACTCCAAGCAAGCAAAAGATCAAAGAGATAACCTCTGATTTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCACAATCAAAAAGAAAGCAATTGATTACAATGCCTAACAATGCTGAATCAGAAGTAGCGACGGAAGTTGAGTCACCTAAGGATCAGAAAACAAAGTCTGAGAATTTCCTCCCCCAACAGAACTCAGCTTCAAGGCCTGAGGATCTCTGCTTTCAGAACCCCGAGATAGGCTCTAGATTGCATTTCTTAGACCAACAGACCCATAAAGAAGAAAACATATTTCCATCAGATGGTGGAATAAAACCTTCTGGGAATCCAAGTCAAGTAGCTTTCTATGCAGGAAATGATCACCAAATTGGGAAGATGGAGGTTCCAGGGAGCTATAATCCATATCAACATACAGAAGACTACAGCATGACAGGATGA 831 0.4284 MEWEKQEQHHHHRHHHQQEELEQNANVNGNGNGGVFYVKVMTDAQVEILRKQISVYATICEQLVEMHKSLTSHQDLAGVRLGNLYCDPLMTSTGHKISARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRAQSKRKQLITMPNNAESEVATEVESPKDQKTKSENFLPQQNSASRPEDLCFQNPEIGSRLHFLDQQTHKEENIFPSDGGIKPSGNPSQVAFYAGNDHQIGKMEVPGSYNPYQHTEDYSMTG* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1393 276 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g1393 276 CDD homeodomain 100 162 IPR001356 GO:0003677
Vvi4g1393 276 MobiDBLite consensus disorder prediction 1 26 - -
Vvi4g1393 276 MobiDBLite consensus disorder prediction 166 202 - -
Vvi4g1393 276 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 274 IPR044559 GO:0003700
Vvi4g1393 276 Gene3D - 102 164 - -
Vvi4g1393 276 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Vvi4g1393 276 SUPERFAMILY Homeodomain-like 99 162 IPR009057 -
Vvi4g1393 276 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Vvi4g1393 276 SMART HOX_1 98 165 IPR001356 GO:0003677
Vvi4g1393 276 MobiDBLite consensus disorder prediction 187 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1393 Vvi-Chr4 20861588 20864724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1393 1 276 Wox Gene Family AT4G35550 52.881 6.31e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi4g1393 Homeodomain 8.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1393 - - vvi:100248809 540.036