Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1392 ATGGAGTGGGAGAAGCAAGAACAACACCACCACCACCACCACCGCCGCCACCACCAACAACAAGAAGAACTGGAGCAGAATGCAAATGTAAGTGGAAATGGAAACGGAAATGGGGGTGTGTTGTACATGAAGGTGATGACAGACGCCCAAATGGAAATTCTGAGGAAGCAGATATCTGTGTATGCCACCATATGTGAACAGCTCGTTGAGATGCATAAATCACTCACTTCTCACCAAGATCTTGCAGGAGTCAGACTGGGAAATCTATATTGTGACCCATTAATGACATCTACTGGTCACAAAATTACTGCCAGACAGCGGTGGACACCGACACCAGTGCAGCTTCAAATTCTTGAGCGTATTTTTGATCAAGGATATGGCACTCCAAGCAAGCAGAAGATCAAAGAGATAACCTCTGATTTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCACGGTCAAAAAGGAAGCAATTGGTTACAGCACCTAACAATGCTGACTCAGAAGTGGAGACAGAAGTTGAGTCACCTAAGGATAAGAAAACAAAGTCTGAGAATTTCCTCCCCCAACAGAACTCAGCTTCAAGGCCTGAGGATCTCTGCTTTCAGAACCCCGAGCTAGGCTCCAGATTGGATTTCTTAGACCAACAGACCCATAAAGAAGAAGCCATATTTCCATCAGATGGAGGAATAAAACCTTCTGGAAATCTGAGCCCAGTAGCTTTCTATGCAGGAAATGATCACCAAATTGGGAAGATGGAAGTTCCAGGGAGCTATAATCCATATCAGCAGACAGAAGACTACAGCATGTCAGGATGA 846 0.448 MEWEKQEQHHHHHHRRHHQQQEELEQNANVSGNGNGNGGVLYMKVMTDAQMEILRKQISVYATICEQLVEMHKSLTSHQDLAGVRLGNLYCDPLMTSTGHKITARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQLVTAPNNADSEVETEVESPKDKKTKSENFLPQQNSASRPEDLCFQNPELGSRLDFLDQQTHKEEAIFPSDGGIKPSGNLSPVAFYAGNDHQIGKMEVPGSYNPYQQTEDYSMSG* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1392 281 ProSiteProfiles 'Homeobox' domain profile. 101 166 IPR001356 GO:0003677
Vvi4g1392 281 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 279 IPR044559 GO:0003700
Vvi4g1392 281 MobiDBLite consensus disorder prediction 180 194 - -
Vvi4g1392 281 MobiDBLite consensus disorder prediction 163 208 - -
Vvi4g1392 281 Gene3D - 107 170 - -
Vvi4g1392 281 MobiDBLite consensus disorder prediction 262 281 - -
Vvi4g1392 281 SMART HOX_1 103 170 IPR001356 GO:0003677
Vvi4g1392 281 Pfam Homeodomain 105 165 IPR001356 GO:0003677
Vvi4g1392 281 CDD homeodomain 105 167 IPR001356 GO:0003677
Vvi4g1392 281 MobiDBLite consensus disorder prediction 1 35 - -
Vvi4g1392 281 MobiDBLite consensus disorder prediction 267 281 - -
Vvi4g1392 281 SUPERFAMILY Homeodomain-like 104 167 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1392 Vvi-Chr4 20843823 20846977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1392 1 281 Wox Gene Family AT4G35550 52.632 2.98e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi4g1392 Homeodomain 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1392 - - vvi:100267830 537.339