Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1388 ATGAAGGGAGGTAAATCGAAGGCCGCTGAGGTGAAGAGAGCTGATAGCAAGCTTTCTGTGAAGAAGAAAGGTGCCGCTGCCGTCGGAAAAAAGACGGCTAAGAAGGAGAAGGCTGTAAAGGATCCAAACAAGCCGAAGAGGCCTGCTAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTACAAAGAAAAGCATCCAGCCAACAAATCTGTGTCTGTTGTCGGTAAAGCTGGTGGTGATAAATGGAAATCGTTGTCAGAAGCTGAGAAAGCGCCCTATGTAGCAAAGGCAGAGAAAAGGAAAACTGAATACAACAAGAGCATGCAGGCCTACAACAAGAGAATGGCTGAGGGACCGACTGCTGCTGAGGAGGAAGAGTCTGACAAATCTAGGTCTGAGGTGAACGACGACGAGGAAGACGAGGATGAGAGTGGAGAGGAAGAAGATGATGAAGAGTAG 465 0.4817 MKGGKSKAAEVKRADSKLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEGPTAAEEEESDKSRSEVNDDEEDEDESGEEEDDEE* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1388 154 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g1388 154 MobiDBLite consensus disorder prediction 1 49 - -
Vvi4g1388 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Vvi4g1388 154 MobiDBLite consensus disorder prediction 87 154 - -
Vvi4g1388 154 Coils Coil 96 116 - -
Vvi4g1388 154 MobiDBLite consensus disorder prediction 87 109 - -
Vvi4g1388 154 Gene3D High mobility group box domain 28 130 IPR036910 -
Vvi4g1388 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Vvi4g1388 154 MobiDBLite consensus disorder prediction 29 44 - -
Vvi4g1388 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Vvi4g1388 154 MobiDBLite consensus disorder prediction 132 154 - -
Vvi4g1388 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Vvi4g1388 154 SUPERFAMILY HMG-box 36 119 IPR036910 -
Vvi4g1388 154 SMART hmgende2 44 115 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1388 Vvi-Chr4 20801686 20802884 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi4g1388 HMG_box 1.7e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1388 K25507 - vvi:100257544 239.195