Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1385 ATGCCAAAGTCCATAAATGTTGTATTTCTGCTGAACCTGCTTGGCTATTTCAAGGTCATTGTCATGGTGGCACTCGCTCATCTGGGTCTGTTCCACCCACCAGAGCAAGCTTACTCCGAGGAACACCCCGCCAGTACTTATGTTGTTGTAATGGACGGGCAAACCCCATCACTAGTCCCGGTTCCAGTTGTGATGGCATGGATCAAGAAGAGGGTTCCAGTAGTAGAATATGGAAGTTTCCTGGAAAGACTCGGGATGCATGAAGACGAGGACGCTGTATGCAGTGTGTGTTTGGATTGCATCAAGAGAAGCCATCAGATCAGAGAGCTGTCCAACTGTTGTCATGTGTTTCATAAGGAGTGCCTGGATACTTGGGTGGACGAGGGTCAGGTGACTTGCCCTTTGTGCAGATCCATGCTGTTTCCAGGCTCCATCTAA 438 0.4909 MPKSINVVFLLNLLGYFKVIVMVALAHLGLFHPPEQAYSEEHPASTYVVVMDGQTPSLVPVPVVMAWIKKRVPVVEYGSFLERLGMHEDEDAVCSVCLDCIKRSHQIRELSNCCHVFHKECLDTWVDEGQVTCPLCRSMLFPGSI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1385 145 PANTHER RING ZINC FINGER PROTEIN-RELATED 67 142 - -
Vvi4g1385 145 SUPERFAMILY RING/U-box 86 141 - -
Vvi4g1385 145 SMART ring_2 94 136 IPR001841 -
Vvi4g1385 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 142 IPR013083 -
Vvi4g1385 145 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Vvi4g1385 145 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1385 Vvi-Chr4 20780319 20780756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1385 9 142 C3H Transcription Factor Family AT1G63840 29.630 3.22e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1385 - - vvi:104879190 306.219