Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1381 ATGTTTGACCTTAATTGTCCTCCTTGTCTGGTTGCTACACCAGAGACATCTGAGAATCAAGAAAACGATAAAGAGGCACCAGGTATCATAATGAAGAAAAAGAGGGCAGCAAGTGAAGATGTAGCTAAAATTGCTTTAGAGGATCTTGTCAAGTACTTTGATGTTCCAATGGTGGAAGCATCAAGGAATTTGAAAATTGGACTAACAGTGCTCAAGAGGAAGTGCAGAGAATTTGGCATTCCTCGTTGGCCACATAGAAAAATTAAATCCCTCGACGGTCTCATTCGTGATCTCCAGGAAGAGGCAGAACGACAACAGCTGGAGAACAAGGCTGCAGCCATGGCCGTGCTAAAGAGGCAAAGGATGTTGGAGACTGAAAAGGAATGTATAGAGCAGAGACCCTTCATGGAGATAGAGGATGAGACCAAGAGATTCAGGCAAGATGTCTTTAAGAGAAGGCACAGAGCTAGAGCCCTTAAGAACCGGGGCTGA 492 0.4451 MFDLNCPPCLVATPETSENQENDKEAPGIIMKKKRAASEDVAKIALEDLVKYFDVPMVEASRNLKIGLTVLKRKCREFGIPRWPHRKIKSLDGLIRDLQEEAERQQLENKAAAMAVLKRQRMLETEKECIEQRPFMEIEDETKRFRQDVFKRRHRARALKNRG* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1381 163 Pfam RWP-RK domain 44 91 IPR003035 -
Vvi4g1381 163 ProSiteProfiles RWP-RK domain profile. 26 111 IPR003035 -
Vvi4g1381 163 Coils Coil 88 115 - -
Vvi4g1381 163 PANTHER PROTEIN RKD4 37 158 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1381 Vvi-Chr4 20738756 20740067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1381 3 162 AtRKD Transcription Factor Family AT4G35590 61.143 3.82e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vvi4g1381 RWP-RK 6.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1381 - - vvi:109122426 327.405