Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1380 ATGGGTAATTGCTGTGGATCTCCTTCAACTGAGCCTACCCCCAGCTTCCCCGGAACCTCCACCCAAGTTAACGAAGTCCCGTCTTCTAAATTTTCAGTCTCAGGGACATCAGATAATACAAGCAACGACGGAGGACTTTCGATAACGAGCAGCAGCGCCGGAAACGGTCGGCTATCGGCGGCACCGGCGAGTGAAAGCCATGACGAGGCATTTCCGGAGGGGCAAATCTTACCAACACCCAATTTGAAAATTTTCAGCTTTGCCGATTTGAAGACTGCCACTCGAAATTTCAAGTCTGATAATGTGCTTGGCATAGGAGGTTTCGGAACTGTTTTCAAGGGCAGTGTTGATGAGAAGACCTTAGCCCCATGTAAGGCAGGCACGGGCATGGTGGTGGCTATCAAGAAATTGAATCCAGAGAGTCTGCAAGGCTTCCAAGAATGGCAGTCCGAGGTGAATTTCCTAGGAAGGCTTTCTCATCCTAACCTGGTTAAGCTGTTGGGATACTGTTGGGATGATAAAGAGCTGCTTCTTGTGTATGAATTTATGCAGAAGGGAAGCTTGGAGAACCATCTTTTCAGAAGAAATCCTTCCATTGAACCACTTTCTTGGCAACTACGGCTCAAAATAGCCATTGGTGCTGCCAGGGGGCTGGCTTTTTTGCATACCTCAGATAAGCAAGTCATTTACAGAGATTTCAAGGCCTCTAATATACTGCTTGATGGGGTGAGAATTCTATTGATTTGA 747 0.4712 MGNCCGSPSTEPTPSFPGTSTQVNEVPSSKFSVSGTSDNTSNDGGLSITSSSAGNGRLSAAPASESHDEAFPEGQILPTPNLKIFSFADLKTATRNFKSDNVLGIGGFGTVFKGSVDEKTLAPCKAGTGMVVAIKKLNPESLQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDKELLLVYEFMQKGSLENHLFRRNPSIEPLSWQLRLKIAIGAARGLAFLHTSDKQVIYRDFKASNILLDGVRILLI* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1380 248 SUPERFAMILY Protein kinase-like (PK-like) 77 242 IPR011009 -
Vvi4g1380 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vvi4g1380 248 ProSiteProfiles Protein kinase domain profile. 97 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1380 248 MobiDBLite consensus disorder prediction 1 59 - -
Vvi4g1380 248 Pfam Protein tyrosine and serine/threonine kinase 99 242 IPR001245 GO:0004672|GO:0006468
Vvi4g1380 248 FunFam Serine/threonine-protein kinase BIK1 63 182 - -
Vvi4g1380 248 PANTHER OS01G0588500 PROTEIN-RELATED 49 242 - -
Vvi4g1380 248 ProSitePatterns Protein kinases ATP-binding region signature. 103 136 IPR017441 GO:0005524
Vvi4g1380 248 Gene3D Phosphorylase Kinase; domain 1 68 182 - -
Vvi4g1380 248 MobiDBLite consensus disorder prediction 1 75 - -
Vvi4g1380 248 Gene3D Transferase(Phosphotransferase) domain 1 183 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1380 Vvi-Chr4 20730862 20733091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1380 83 242 Glycoside Hydrolase AT3G07070 49.068 1.40e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi4g1380 PK_Tyr_Ser-Thr 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1380 - - vvi:100241940 490.345