Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1372 ATGGGCGGTGATGGAGTTGCCGGCGATGCTAGCGAATCGAACGCCGGCGGTGGAGTCACCGTTCACGTCCGATGCTCCAACGGTTCGAAGTTCTCTGTGCAGATTAGCCTCGAATCGACCGTCAGAGCATTCAAAGCCGTTCTCTCGCAGAACTGCGATATTCCCGCGGAGCAGCAGCGATTGATTTACAAGGGACGGATCTTGAAGGACGACCAAACCCTAGAGAGCTACGGCCTGGAGGCAGATCACACTGTCCACTTGGTTCGTGGTTTTGCCCCACCTGCACCAGCTGACAAGGCTGGTCCAGCCGATTCAGGGCGTCCAAATACTACTCCTCCAAGTATTCCTATGGATGCTGGTTTGAATGAAGGTGGGGCATTAGGAGGTTCTGGTTTTGGAGCTTCCCTCTTTCCTGGGCTTGGTATCAATGGTTTAGGTGGCACTGGAGGTTTATTTGGGGCTGGACTTCCAGAGTTTGAGCAAATGCAGCAACAGTTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTGACAGAGCAATGAGCAACATTGAATCATCCCCTGAGGGATTCAACATGCTCAGGCGCATGTATGAAACTGTTCAAGAGCCATTTCTGAATGCAACTACAATGTCTGGGGACAGTGGAAGTGATTTAGGATCGAACCCTTTTGCAGCTCTTTTAGGGACCCAAGGTGGGGTTCAGGCCCATGATCGATCTGCTAATCCTCCAACCGCTGGTTCTGATACAACAAATAATTCTCCTGCTCCAAATACAAACCCTCTTCCCAACCCTTGGACCCCAGGTGGTGGTGGTGCTGGAGGTGCCCAAACAAACACCACTACAAGGTCAAATCCTGTGGGTGATGCTAGGACTCCAACACCCAGTGGATTGGGTGGACTTGGTCTCCCAGAGCTTGAGAGCATGTTTGGCTCCATGCCAGATACTAATTCACTGAATCAGATTATGCAAAATCCTGCTATATCACAGATGATGCAGAGCCTCCTTTCCAGTCCTCAGTATATGAACCAGATACTTGGTCTCAATCCCCAGTTGCGTAGCGTTCTTGATTCCAATCCTCAACTAAGAGAAATGATGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAGGAATCAGGTCAGACTGGTGGTGGCACAGGAGGAATGCTTAACAATATGGGGTTAGAGATGTTGATGAACATGTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGGTTTCTTTGACACACAGGAGAATATACGGGCTCTGACTGCCACTGCAGGGAATGTCCATGCTGCAGTGGAGCGGCTATTGGGGAACCCTGGTCAGTAG 1551 0.4649 MGGDGVAGDASESNAGGGVTVHVRCSNGSKFSVQISLESTVRAFKAVLSQNCDIPAEQQRLIYKGRILKDDQTLESYGLEADHTVHLVRGFAPPAPADKAGPADSGRPNTTPPSIPMDAGLNEGGALGGSGFGASLFPGLGINGLGGTGGLFGAGLPEFEQMQQQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMSGDSGSDLGSNPFAALLGTQGGVQAHDRSANPPTAGSDTTNNSPAPNTNPLPNPWTPGGGGAGGAQTNTTTRSNPVGDARTPTPSGLGGLGLPELESMFGSMPDTNSLNQIMQNPAISQMMQSLLSSPQYMNQILGLNPQLRSVLDSNPQLREMMQNPEFLRQLTSPETMQQFLTLQQSLLSQLGRQQSSQESGQTGGGTGGMLNNMGLEMLMNMFGGLGAGSMNIPSRSDVPPEQLYATQLSQLQEMGFFDTQENIRALTATAGNVHAAVERLLGNPGQ* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1372 516 CDD UBA_PLICs 474 512 - -
Vvi4g1372 516 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Vvi4g1372 516 MobiDBLite consensus disorder prediction 298 316 - -
Vvi4g1372 516 Coils Coil 159 167 - -
Vvi4g1372 516 CDD Ubl_Dsk2p_like 19 91 - -
Vvi4g1372 516 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Vvi4g1372 516 MobiDBLite consensus disorder prediction 420 441 - -
Vvi4g1372 516 SUPERFAMILY UBA-like 470 512 IPR009060 GO:0005515
Vvi4g1372 516 MobiDBLite consensus disorder prediction 233 343 - -
Vvi4g1372 516 Gene3D - 9 101 - -
Vvi4g1372 516 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 468 513 IPR015940 -
Vvi4g1372 516 MobiDBLite consensus disorder prediction 420 438 - -
Vvi4g1372 516 SUPERFAMILY Ubiquitin-like 11 108 IPR029071 -
Vvi4g1372 516 PANTHER UBIQUILIN 201 511 IPR015496 -
Vvi4g1372 516 SMART uba_6 474 512 IPR015940 -
Vvi4g1372 516 MobiDBLite consensus disorder prediction 90 123 - -
Vvi4g1372 516 FunFam Ubiquitin domain-containing protein DSK2b 457 515 - -
Vvi4g1372 516 SMART CBM 328 370 IPR006636 -
Vvi4g1372 516 SMART CBM 374 409 IPR006636 -
Vvi4g1372 516 SMART ubq_7 19 90 IPR000626 GO:0005515
Vvi4g1372 516 Gene3D - 456 516 - -
Vvi4g1372 516 FunFam Ubiquitin domain-containing protein DSK2b 16 103 - -
Vvi4g1372 516 MobiDBLite consensus disorder prediction 260 282 - -
Vvi4g1372 516 Pfam UBA/TS-N domain 474 510 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1372 Vvi-Chr4 20609662 20620706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1372 21 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.353 6.07e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1372 K04523 - vvi:100250759 472.626