Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1367 ATGGCGAAGAGATCGTTAGAGATAAAAAGGGAATACGAAAGACAAGAAGAGTATGAAACGGAGGATGAAGTGGGAGAATCTGAAAATGATGATGAAACTGTTGATTACGGTGGTGGTGGTGATGGAGTAGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGCGGGAGGAGGAAGTGGAGGACAGAAGAAAAAGGGCGTTGATAAGGATAGTTTCGGGGCAGAGAAGGGGAGTTCCGTCGAATACGCTGTGTTGTCAGGCCGATGATTGTGGTGTGGACTTGAGGGCGGCGAAGAGGTACCACAGAAGGCACAAGGTCTGCGAGCGACATGCTAAGGCGGCCTTTGTTTTCCTGGGCGGCATTGAGCAGAGGTTTTGCCAGCAGTGTAGCAGATTCCATGAAATTTCTCAGTTTGATGATACCAAAAGAAGCTGTCGAAAGCGGCTGGCTGGACATAACCAGCGCAGAAGAAAGAACCAACCGGACCCTCCTCACACAGAGGATAGACGGAAACCACCGAATTCTAAAATGAATGCTAGCTCACTCAAGGCCACAGAGCATTCGGACGACAATGAACTATCTTTTCGAGGGCAGAGCAATATCAGGCATTTTCGAATTAGGTGA 624 0.4952 MAKRSLEIKREYERQEEYETEDEVGESENDDETVDYGGGGDGVEEEEEEEEQEEREEEVEDRRKRALIRIVSGQRRGVPSNTLCCQADDCGVDLRAAKRYHRRHKVCERHAKAAFVFLGGIEQRFCQQCSRFHEISQFDDTKRSCRKRLAGHNQRRRKNQPDPPHTEDRRKPPNSKMNASSLKATEHSDDNELSFRGQSNIRHFRIR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1367 207 Coils Coil 42 69 - -
Vvi4g1367 207 Gene3D - 77 146 IPR036893 GO:0003677|GO:0005634
Vvi4g1367 207 MobiDBLite consensus disorder prediction 1 16 - -
Vvi4g1367 207 MobiDBLite consensus disorder prediction 148 207 - -
Vvi4g1367 207 MobiDBLite consensus disorder prediction 155 174 - -
Vvi4g1367 207 Pfam SBP domain 85 158 IPR004333 GO:0003677
Vvi4g1367 207 ProSiteProfiles Zinc finger SBP-type profile. 82 159 IPR004333 GO:0003677
Vvi4g1367 207 MobiDBLite consensus disorder prediction 1 60 - -
Vvi4g1367 207 SUPERFAMILY SBT domain 83 163 IPR036893 GO:0003677|GO:0005634
Vvi4g1367 207 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 166 IPR044817 GO:0003677
Vvi4g1367 207 MobiDBLite consensus disorder prediction 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1367 Vvi-Chr4 20536617 20537764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1367 77 162 SBP-box Gene Family AT3G60030 66.279 2.02e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi4g1367 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1367 - - vvi:100257602 351.673