Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1365 ATGCAAAAAAATAAACACCATCGTAGCTCTTATGGCCCAAATGAGTTAAGTCTGTGTGTTGTGAGCTTAGTTATTATATGGATCACATATTGGATTCGTAGATGGAAGAACCCCAGATGCAATGTAACACTTCCTCCTGGTTCTCTGGGCTTCCCACTCATTGGAGAAAGCATTCAGTTTCTCATTTCCTGTAGCAACTCTTTAGATCTTCACCCATTTTTCAGAAAAAGAATTCAGAAATATGGCCCTTTGTTCAAAACAAGCATGCTTGGTCGACAAGTGGTGGTCACAGCTGACCCGGAGGCCAACCATTTCATCCTTGAACAAGAGGGGAAGTCAGTGGAAATGTGTTACTTGGACTCTGTAGCTCAGCTTTGCGGACACGATGAGTCATCTGCTGGTGCAACTGGTCATATTCACAAGTATCTTAGGACCCTGATTCTGAATCACTTCGGCTATGAGCGCCTCAGATATAAGCTACTCAAGAAAGTGGAAGCCATGGCACATAAAAGCCTGGGTGCTTGGTCGAGCCAACCGTCTGTGGAGTTGAATCGTGCAACTTCGCAGATAATGTTAGATTTCATTTCAAAGGAGTTGTTTAGCTATGACCCAAAAGGATGCACAGAAAGCATGGGCGATGCATTCATCGACTTTTTAGATAGCTTAGCGTCCGTCCCCTTGAACATACCTGGTACAACGTTTCATAAATGCTTGAAGAACCAAAAGAAGACAATGAAGATTCTGAGGGAGATAGTAGACGAGAGGTGTGCTTCTCCTGAGATACGCCGAGGTGATTTTCTTGATTATTTCCTGGAAGGCATGAAAAAGGAGGCGTTCATAACCAAAGATTTCATTGCGTTCGTAATGTTTGGGCTTCTCTTTGCTAGCTTTGAGTCGATTCCCATCATGCTTTCTTTAGCCCTTAAGTTAATAATGGAGCACCCACTAGTGTTGCAAGAATTGAAGAATGAACATGAAGCTATTCTTAGAAATAAGGATACTTCAAATTTCACACTCACGTGGGAAGACTACAAATCCATGACTTTTACACTTCATGTCATCGATGAAACACTTAGGATGGCAAATGTTGGTCTGGGGAATTTTAGAAAAGCTCTAGAAGACATAAAAATAAAGGGGCACACAATTCCAGCAGGGTGGACAATTTTAGTTGTCTCCTCAGTACTTCACATGGACCCAAATATATACCCTGATCCTCTTGTTTTCAACCCATGGAGGTGGAAGGATGGAAGATCTAAAATCACAACCAAGAATTTCACGCCATTCGGCGGGGGCATACGCTTTTGTCCAGGAGCAGAACTTAGCAAGCTGACAATGGCCATATTTCTTCATGTGGCAGTCACCAAATACAGGTTTACAAAAATTAAGGGAGGAAACCTAGTTCGAAATCCAGTTTTAAAATTTAAAGACGGGTTTCATATCAAGGTTTCAAAGAAGATGAGTCATGAAGATGGTGCTGAAAGAGAAGCCAAGTCAGGGAGTGTATCAATCATGTAG 1515 0.4211 MQKNKHHRSSYGPNELSLCVVSLVIIWITYWIRRWKNPRCNVTLPPGSLGFPLIGESIQFLISCSNSLDLHPFFRKRIQKYGPLFKTSMLGRQVVVTADPEANHFILEQEGKSVEMCYLDSVAQLCGHDESSAGATGHIHKYLRTLILNHFGYERLRYKLLKKVEAMAHKSLGAWSSQPSVELNRATSQIMLDFISKELFSYDPKGCTESMGDAFIDFLDSLASVPLNIPGTTFHKCLKNQKKTMKILREIVDERCASPEIRRGDFLDYFLEGMKKEAFITKDFIAFVMFGLLFASFESIPIMLSLALKLIMEHPLVLQELKNEHEAILRNKDTSNFTLTWEDYKSMTFTLHVIDETLRMANVGLGNFRKALEDIKIKGHTIPAGWTILVVSSVLHMDPNIYPDPLVFNPWRWKDGRSKITTKNFTPFGGGIRFCPGAELSKLTMAIFLHVAVTKYRFTKIKGGNLVRNPVLKFKDGFHIKVSKKMSHEDGAEREAKSGSVSIM* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1365 504 CDD CYP90-like 77 484 - -
Vvi4g1365 504 PRINTS E-class P450 group IV signature 419 435 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1365 504 PRINTS E-class P450 group IV signature 72 95 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1365 504 PRINTS E-class P450 group IV signature 347 363 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1365 504 PRINTS E-class P450 group IV signature 435 453 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1365 504 PRINTS E-class P450 group IV signature 396 414 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1365 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Vvi4g1365 504 SUPERFAMILY Cytochrome P450 32 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1365 504 Gene3D Cytochrome P450 36 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1365 504 FunFam Cytochrome P450 family protein 36 484 - -
Vvi4g1365 504 PANTHER CYTOCHROME P450 26 44 459 - -
Vvi4g1365 504 Pfam Cytochrome P450 45 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1365 Vvi-Chr4 20522829 20529516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1365 18 485 Cytochrome P450 AT1G12740 45.684 1.60e-155 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1365 - - vvi:100264506 840.106